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NDRG3 (NDRG family member 3)

Identity

Other alias-
HGNC (Hugo) NDRG3
LocusID (NCBI) 57446
Atlas_Id 50661
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 36651766 and ends at 36746138 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NDRG3 (20q11.23) / LMTK2 (7q21.3)NDRG3 (20q11.23) / NDRG3 (20q11.23)NDRG3 (20q11.23) / WBSCR22 (7q11.23)
NDRG3 (20q11.23) / ZXDC (3q21.3)RC3H2 (9q33.2) / NDRG3 (20q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDRG3   14462
Cards
Entrez_Gene (NCBI)NDRG3  57446  NDRG family member 3
Aliases
GeneCards (Weizmann)NDRG3
Ensembl hg19 (Hinxton)ENSG00000101079 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101079 [Gene_View]  chr20:36651766-36746138 [Contig_View]  NDRG3 [Vega]
ICGC DataPortalENSG00000101079
TCGA cBioPortalNDRG3
AceView (NCBI)NDRG3
Genatlas (Paris)NDRG3
WikiGenes57446
SOURCE (Princeton)NDRG3
Genetics Home Reference (NIH)NDRG3
Genomic and cartography
GoldenPath hg38 (UCSC)NDRG3  -     chr20:36651766-36746138 -  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NDRG3  -     20q11.23   [Description]    (hg19-Feb_2009)
EnsemblNDRG3 - 20q11.23 [CytoView hg19]  NDRG3 - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBINDRG3 [Mapview hg19]  NDRG3 [Mapview hg38]
OMIM605273   
Gene and transcription
Genbank (Entrez)AA903471 AB044943 AF308609 AK023618 AK027665
RefSeq transcript (Entrez)NM_022477 NM_032013
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDRG3
Cluster EST : UnigeneHs.437338 [ NCBI ]
CGAP (NCI)Hs.437338
Alternative Splicing GalleryENSG00000101079
Gene ExpressionNDRG3 [ NCBI-GEO ]   NDRG3 [ EBI - ARRAY_EXPRESS ]   NDRG3 [ SEEK ]   NDRG3 [ MEM ]
Gene Expression Viewer (FireBrowse)NDRG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57446
GTEX Portal (Tissue expression)NDRG3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGV2
Splice isoforms : SwissVarQ9UGV2
PhosPhoSitePlusQ9UGV2
Domains : Interpro (EBI)AB_hydrolase    NDRG    NDRG3   
Domain families : Pfam (Sanger)Ndr (PF03096)   
Domain families : Pfam (NCBI)pfam03096   
Conserved Domain (NCBI)NDRG3
DMDM Disease mutations57446
Blocks (Seattle)NDRG3
SuperfamilyQ9UGV2
Human Protein AtlasENSG00000101079
Peptide AtlasQ9UGV2
HPRD12007
IPIIPI00005605   IPI00218503   IPI00218504   IPI01014309   IPI01012249   IPI00984277   IPI00644290   IPI00514909   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGV2
IntAct (EBI)Q9UGV2
FunCoupENSG00000101079
BioGRIDNDRG3
STRING (EMBL)NDRG3
ZODIACNDRG3
Ontologies - Pathways
QuickGOQ9UGV2
Ontology : AmiGOmolecular_function  cytoplasm  spermatogenesis  cell differentiation  negative regulation of cell growth  extracellular exosome  
Ontology : EGO-EBImolecular_function  cytoplasm  spermatogenesis  cell differentiation  negative regulation of cell growth  extracellular exosome  
NDEx NetworkNDRG3
Atlas of Cancer Signalling NetworkNDRG3
Wikipedia pathwaysNDRG3
Orthology - Evolution
OrthoDB57446
GeneTree (enSembl)ENSG00000101079
Phylogenetic Trees/Animal Genes : TreeFamNDRG3
HOVERGENQ9UGV2
HOGENOMQ9UGV2
Homologs : HomoloGeneNDRG3
Homology/Alignments : Family Browser (UCSC)NDRG3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDRG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDRG3
dbVarNDRG3
ClinVarNDRG3
1000_GenomesNDRG3 
Exome Variant ServerNDRG3
ExAC (Exome Aggregation Consortium)NDRG3 (select the gene name)
Genetic variants : HAPMAP57446
Genomic Variants (DGV)NDRG3 [DGVbeta]
DECIPHERNDRG3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNDRG3 
Mutations
ICGC Data PortalNDRG3 
TCGA Data PortalNDRG3 
Broad Tumor PortalNDRG3
OASIS PortalNDRG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDRG3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNDRG3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NDRG3
DgiDB (Drug Gene Interaction Database)NDRG3
DoCM (Curated mutations)NDRG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDRG3 (select a term)
intoGenNDRG3
Cancer3DNDRG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605273   
Orphanet
MedgenNDRG3
Genetic Testing Registry NDRG3
NextProtQ9UGV2 [Medical]
TSGene57446
GENETestsNDRG3
Target ValidationNDRG3
Huge Navigator NDRG3 [HugePedia]
snp3D : Map Gene to Disease57446
BioCentury BCIQNDRG3
ClinGenNDRG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57446
Chemical/Pharm GKB GenePA31484
Clinical trialNDRG3
Miscellaneous
canSAR (ICR)NDRG3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDRG3
EVEXNDRG3
GoPubMedNDRG3
iHOPNDRG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:01:21 CEST 2017

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