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NDST3 (N-deacetylase and N-sulfotransferase 3)

Identity

Alias_namesN-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
Alias_symbol (synonym)HSST3
Other alias
HGNC (Hugo) NDST3
LocusID (NCBI) 9348
Atlas_Id 41514
Location 4q26  [Link to chromosome band 4q26]
Location_base_pair Starts at 118034345 and ends at 118258634 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RPS6 (9p22.1) / NDST3 (4q26)TXN (9q31.3) / NDST3 (4q26)TXN 9q31.3 / NDST3 4q26

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDST3   7682
Cards
Entrez_Gene (NCBI)NDST3  9348  N-deacetylase and N-sulfotransferase 3
AliasesHSST3
GeneCards (Weizmann)NDST3
Ensembl hg19 (Hinxton)ENSG00000164100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164100 [Gene_View]  chr4:118034345-118258634 [Contig_View]  NDST3 [Vega]
ICGC DataPortalENSG00000164100
TCGA cBioPortalNDST3
AceView (NCBI)NDST3
Genatlas (Paris)NDST3
WikiGenes9348
SOURCE (Princeton)NDST3
Genetics Home Reference (NIH)NDST3
Genomic and cartography
GoldenPath hg38 (UCSC)NDST3  -     chr4:118034345-118258634 +  4q26   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NDST3  -     4q26   [Description]    (hg19-Feb_2009)
EnsemblNDST3 - 4q26 [CytoView hg19]  NDST3 - 4q26 [CytoView hg38]
Mapping of homologs : NCBINDST3 [Mapview hg19]  NDST3 [Mapview hg38]
OMIM603950   
Gene and transcription
Genbank (Entrez)AF074924 AF076605 AK295439 AY358852 BC034037
RefSeq transcript (Entrez)NM_004784
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDST3
Cluster EST : UnigeneHs.480596 [ NCBI ]
CGAP (NCI)Hs.480596
Alternative Splicing GalleryENSG00000164100
Gene ExpressionNDST3 [ NCBI-GEO ]   NDST3 [ EBI - ARRAY_EXPRESS ]   NDST3 [ SEEK ]   NDST3 [ MEM ]
Gene Expression Viewer (FireBrowse)NDST3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9348
GTEX Portal (Tissue expression)NDST3
Human Protein AtlasENSG00000164100-NDST3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95803   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95803  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95803
Splice isoforms : SwissVarO95803
Catalytic activity : Enzyme2.8.2.8 [ Enzyme-Expasy ]   2.8.2.82.8.2.8 [ IntEnz-EBI ]   2.8.2.8 [ BRENDA ]   2.8.2.8 [ KEGG ]   
PhosPhoSitePlusO95803
Domains : Interpro (EBI)Heparan_SO4_deacetylase    P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)HSNSD (PF12062)    Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam12062    pfam00685   
Conserved Domain (NCBI)NDST3
DMDM Disease mutations9348
Blocks (Seattle)NDST3
SuperfamilyO95803
Human Protein Atlas [tissue]ENSG00000164100-NDST3 [tissue]
Peptide AtlasO95803
IPIIPI00329497   IPI00432131   IPI00911099   
Protein Interaction databases
DIP (DOE-UCLA)O95803
IntAct (EBI)O95803
FunCoupENSG00000164100
BioGRIDNDST3
STRING (EMBL)NDST3
ZODIACNDST3
Ontologies - Pathways
QuickGOO95803
Ontology : AmiGOGolgi membrane  heparan sulfate proteoglycan biosynthetic process  [heparan sulfate]-glucosamine N-sulfotransferase activity  integral component of membrane  hydrolase activity  heparin biosynthetic process  
Ontology : EGO-EBIGolgi membrane  heparan sulfate proteoglycan biosynthetic process  [heparan sulfate]-glucosamine N-sulfotransferase activity  integral component of membrane  hydrolase activity  heparin biosynthetic process  
Pathways : KEGGGlycosaminoglycan biosynthesis - heparan sulfate / heparin   
NDEx NetworkNDST3
Atlas of Cancer Signalling NetworkNDST3
Wikipedia pathwaysNDST3
Orthology - Evolution
OrthoDB9348
GeneTree (enSembl)ENSG00000164100
Phylogenetic Trees/Animal Genes : TreeFamNDST3
HOVERGENO95803
HOGENOMO95803
Homologs : HomoloGeneNDST3
Homology/Alignments : Family Browser (UCSC)NDST3
Gene fusions - Rearrangements
Fusion : MitelmanTXN/NDST3 [9q31.3/4q26]  [t(4;9)(q26;q31)]  
Fusion: TCGA_MDACCTXN 9q31.3 NDST3 4q26 GBM
Tumor Fusion PortalNDST3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDST3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDST3
dbVarNDST3
ClinVarNDST3
1000_GenomesNDST3 
Exome Variant ServerNDST3
ExAC (Exome Aggregation Consortium)ENSG00000164100
GNOMAD BrowserENSG00000164100
Genetic variants : HAPMAP9348
Genomic Variants (DGV)NDST3 [DGVbeta]
DECIPHERNDST3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNDST3 
Mutations
ICGC Data PortalNDST3 
TCGA Data PortalNDST3 
Broad Tumor PortalNDST3
OASIS PortalNDST3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDST3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNDST3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NDST3
DgiDB (Drug Gene Interaction Database)NDST3
DoCM (Curated mutations)NDST3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDST3 (select a term)
intoGenNDST3
Cancer3DNDST3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603950   
Orphanet
DisGeNETNDST3
MedgenNDST3
Genetic Testing Registry NDST3
NextProtO95803 [Medical]
TSGene9348
GENETestsNDST3
Target ValidationNDST3
Huge Navigator NDST3 [HugePedia]
snp3D : Map Gene to Disease9348
BioCentury BCIQNDST3
ClinGenNDST3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9348
Chemical/Pharm GKB GenePA31488
Clinical trialNDST3
Miscellaneous
canSAR (ICR)NDST3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDST3
EVEXNDST3
GoPubMedNDST3
iHOPNDST3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:25:51 CET 2017

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