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NDST4 (N-deacetylase/N-sulfotransferase 4)

Identity

Alias_namesN-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4
Other aliasN-HSST
N-HSST 4
NDST-4
NHSST4
HGNC (Hugo) NDST4
LocusID (NCBI) 64579
Atlas_Id 41515
Location 4q26  [Link to chromosome band 4q26]
Location_base_pair Starts at 115748929 and ends at 116035032 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AP1AR (4q25) / NDST4 (4q26)NDST4 (4q26) / TRPC3 (4q27)AP1AR 4q25 / NDST4 4q26

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDST4   20779
Cards
Entrez_Gene (NCBI)NDST4  64579  N-deacetylase/N-sulfotransferase 4
AliasesN-HSST; N-HSST; NDST-4; NHSST4
GeneCards (Weizmann)NDST4
Ensembl hg19 (Hinxton)ENSG00000138653 [Gene_View]  chr4:115748929-116035032 [Contig_View]  NDST4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138653 [Gene_View]  chr4:115748929-116035032 [Contig_View]  NDST4 [Vega]
ICGC DataPortalENSG00000138653
TCGA cBioPortalNDST4
AceView (NCBI)NDST4
Genatlas (Paris)NDST4
WikiGenes64579
SOURCE (Princeton)NDST4
Genetics Home Reference (NIH)NDST4
Genomic and cartography
GoldenPath hg19 (UCSC)NDST4  -     chr4:115748929-116035032 -  4q26   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NDST4  -     4q26   [Description]    (hg38-Dec_2013)
EnsemblNDST4 - 4q26 [CytoView hg19]  NDST4 - 4q26 [CytoView hg38]
Mapping of homologs : NCBINDST4 [Mapview hg19]  NDST4 [Mapview hg38]
OMIM615039   
Gene and transcription
Genbank (Entrez)AB036429 AK289670 BC012326 BC113075 BC156696
RefSeq transcript (Entrez)NM_022569
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)NDST4
Cluster EST : UnigeneHs.591700 [ NCBI ]
CGAP (NCI)Hs.591700
Alternative Splicing GalleryENSG00000138653
Gene ExpressionNDST4 [ NCBI-GEO ]   NDST4 [ EBI - ARRAY_EXPRESS ]   NDST4 [ SEEK ]   NDST4 [ MEM ]
Gene Expression Viewer (FireBrowse)NDST4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64579
GTEX Portal (Tissue expression)NDST4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3R1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3R1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3R1
Splice isoforms : SwissVarQ9H3R1
Catalytic activity : Enzyme2.8.2.8 [ Enzyme-Expasy ]   2.8.2.82.8.2.8 [ IntEnz-EBI ]   2.8.2.8 [ BRENDA ]   2.8.2.8 [ KEGG ]   
PhosPhoSitePlusQ9H3R1
Domains : Interpro (EBI)Heparan_SO4_deacetylase    P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)HSNSD (PF12062)    Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam12062    pfam00685   
Conserved Domain (NCBI)NDST4
DMDM Disease mutations64579
Blocks (Seattle)NDST4
SuperfamilyQ9H3R1
Human Protein AtlasENSG00000138653
Peptide AtlasQ9H3R1
HPRD10116
IPIIPI00021733   IPI00737103   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3R1
IntAct (EBI)Q9H3R1
FunCoupENSG00000138653
BioGRIDNDST4
STRING (EMBL)NDST4
ZODIACNDST4
Ontologies - Pathways
QuickGOQ9H3R1
Ontology : AmiGOGolgi membrane  heparan sulfate proteoglycan biosynthetic process  [heparan sulfate]-glucosamine N-sulfotransferase activity  integral component of membrane  deacetylase activity  heparin biosynthetic process  
Ontology : EGO-EBIGolgi membrane  heparan sulfate proteoglycan biosynthetic process  [heparan sulfate]-glucosamine N-sulfotransferase activity  integral component of membrane  deacetylase activity  heparin biosynthetic process  
Pathways : KEGGGlycosaminoglycan biosynthesis - heparan sulfate / heparin   
NDEx NetworkNDST4
Atlas of Cancer Signalling NetworkNDST4
Wikipedia pathwaysNDST4
Orthology - Evolution
OrthoDB64579
GeneTree (enSembl)ENSG00000138653
Phylogenetic Trees/Animal Genes : TreeFamNDST4
HOVERGENQ9H3R1
HOGENOMQ9H3R1
Homologs : HomoloGeneNDST4
Homology/Alignments : Family Browser (UCSC)NDST4
Gene fusions - Rearrangements
Fusion: TCGAAP1AR 4q25 NDST4 4q26 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDST4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDST4
dbVarNDST4
ClinVarNDST4
1000_GenomesNDST4 
Exome Variant ServerNDST4
ExAC (Exome Aggregation Consortium)NDST4 (select the gene name)
Genetic variants : HAPMAP64579
Genomic Variants (DGV)NDST4 [DGVbeta]
DECIPHER (Syndromes)4:115748929-116035032  ENSG00000138653
CONAN: Copy Number AnalysisNDST4 
Mutations
ICGC Data PortalNDST4 
TCGA Data PortalNDST4 
Broad Tumor PortalNDST4
OASIS PortalNDST4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDST4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNDST4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NDST4
DgiDB (Drug Gene Interaction Database)NDST4
DoCM (Curated mutations)NDST4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDST4 (select a term)
intoGenNDST4
Cancer3DNDST4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615039   
Orphanet
MedgenNDST4
Genetic Testing Registry NDST4
NextProtQ9H3R1 [Medical]
TSGene64579
GENETestsNDST4
Huge Navigator NDST4 [HugePedia]
snp3D : Map Gene to Disease64579
BioCentury BCIQNDST4
ClinGenNDST4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64579
Chemical/Pharm GKB GenePA134875549
Clinical trialNDST4
Miscellaneous
canSAR (ICR)NDST4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDST4
EVEXNDST4
GoPubMedNDST4
iHOPNDST4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:18:27 CET 2017

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