Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NDUFA4L2 (NDUFA4, mitochondrial complex associated like 2)

Identity

Other aliasNUOMS
HGNC (Hugo) NDUFA4L2
LocusID (NCBI) 56901
Atlas_Id 56790
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 57234903 and ends at 57240692 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NDUFA4L2 (12q13.3) / AVIL (12q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDUFA4L2   29836
Cards
Entrez_Gene (NCBI)NDUFA4L2  56901  NDUFA4, mitochondrial complex associated like 2
AliasesNUOMS
GeneCards (Weizmann)NDUFA4L2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:57234903-57240692 [Contig_View]  NDUFA4L2 [Vega]
TCGA cBioPortalNDUFA4L2
AceView (NCBI)NDUFA4L2
Genatlas (Paris)NDUFA4L2
WikiGenes56901
SOURCE (Princeton)NDUFA4L2
Genetics Home Reference (NIH)NDUFA4L2
Genomic and cartography
GoldenPath hg38 (UCSC)NDUFA4L2  -     chr12:57234903-57240692 -  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NDUFA4L2  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblNDUFA4L2 - 12q13.3 [CytoView hg19]  NDUFA4L2 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBINDUFA4L2 [Mapview hg19]  NDUFA4L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF164796 AK094275 AK129629 BC011910 CR457176
RefSeq transcript (Entrez)NM_020142
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDUFA4L2
Cluster EST : UnigeneHs.75069 [ NCBI ]
CGAP (NCI)Hs.75069
Gene ExpressionNDUFA4L2 [ NCBI-GEO ]   NDUFA4L2 [ EBI - ARRAY_EXPRESS ]   NDUFA4L2 [ SEEK ]   NDUFA4L2 [ MEM ]
Gene Expression Viewer (FireBrowse)NDUFA4L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56901
GTEX Portal (Tissue expression)NDUFA4L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRX3
Splice isoforms : SwissVarQ9NRX3
PhosPhoSitePlusQ9NRX3
Domains : Interpro (EBI)B12D   
Domain families : Pfam (Sanger)B12D (PF06522)   
Domain families : Pfam (NCBI)pfam06522   
Conserved Domain (NCBI)NDUFA4L2
DMDM Disease mutations56901
Blocks (Seattle)NDUFA4L2
SuperfamilyQ9NRX3
Peptide AtlasQ9NRX3
IPIIPI00024522   IPI01025310   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRX3
IntAct (EBI)Q9NRX3
BioGRIDNDUFA4L2
STRING (EMBL)NDUFA4L2
ZODIACNDUFA4L2
Ontologies - Pathways
QuickGOQ9NRX3
Ontology : AmiGOcytochrome-c oxidase activity  mitochondrial respiratory chain complex IV  hydrogen ion transmembrane transport  
Ontology : EGO-EBIcytochrome-c oxidase activity  mitochondrial respiratory chain complex IV  hydrogen ion transmembrane transport  
Pathways : KEGGOxidative phosphorylation    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkNDUFA4L2
Atlas of Cancer Signalling NetworkNDUFA4L2
Wikipedia pathwaysNDUFA4L2
Orthology - Evolution
OrthoDB56901
Phylogenetic Trees/Animal Genes : TreeFamNDUFA4L2
HOVERGENQ9NRX3
HOGENOMQ9NRX3
Homologs : HomoloGeneNDUFA4L2
Homology/Alignments : Family Browser (UCSC)NDUFA4L2
Gene fusions - Rearrangements
Tumor Fusion PortalNDUFA4L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDUFA4L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDUFA4L2
dbVarNDUFA4L2
ClinVarNDUFA4L2
1000_GenomesNDUFA4L2 
Exome Variant ServerNDUFA4L2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP56901
Genomic Variants (DGV)NDUFA4L2 [DGVbeta]
DECIPHERNDUFA4L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNDUFA4L2 
Mutations
ICGC Data PortalNDUFA4L2 
TCGA Data PortalNDUFA4L2 
Broad Tumor PortalNDUFA4L2
OASIS PortalNDUFA4L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDUFA4L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNDUFA4L2
BioMutasearch NDUFA4L2
DgiDB (Drug Gene Interaction Database)NDUFA4L2
DoCM (Curated mutations)NDUFA4L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDUFA4L2 (select a term)
intoGenNDUFA4L2
Cancer3DNDUFA4L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNDUFA4L2
MedgenNDUFA4L2
Genetic Testing Registry NDUFA4L2
NextProtQ9NRX3 [Medical]
TSGene56901
GENETestsNDUFA4L2
Target ValidationNDUFA4L2
Huge Navigator NDUFA4L2 [HugePedia]
snp3D : Map Gene to Disease56901
BioCentury BCIQNDUFA4L2
ClinGenNDUFA4L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56901
Chemical/Pharm GKB GenePA144596402
Clinical trialNDUFA4L2
Miscellaneous
canSAR (ICR)NDUFA4L2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDUFA4L2
EVEXNDUFA4L2
GoPubMedNDUFA4L2
iHOPNDUFA4L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:25:52 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.