Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NDUFA9 (NADH:ubiquinone oxidoreductase subunit A9)

Identity

Alias_namesNDUFS2L
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 (39kD)
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa
Alias_symbol (synonym)SDR22E1
CI-39k
Other aliasCC6
CI39k
HGNC (Hugo) NDUFA9
LocusID (NCBI) 4704
Atlas_Id 70763
Location 12p13.32  [Link to chromosome band 12p13]
Location_base_pair Starts at 4649098 and ends at 4687554 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HNRNPH3 (10q21.3) / NDUFA9 (12p13.32)NDUFA9 (12p13.32) / TRPC7 (5q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDUFA9   7693
Cards
Entrez_Gene (NCBI)NDUFA9  4704  NADH:ubiquinone oxidoreductase subunit A9
AliasesCC6; CI-39k; CI39k; NDUFS2L; 
SDR22E1
GeneCards (Weizmann)NDUFA9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:4649098-4687554 [Contig_View]  NDUFA9 [Vega]
TCGA cBioPortalNDUFA9
AceView (NCBI)NDUFA9
Genatlas (Paris)NDUFA9
WikiGenes4704
SOURCE (Princeton)NDUFA9
Genetics Home Reference (NIH)NDUFA9
Genomic and cartography
GoldenPath hg38 (UCSC)NDUFA9  -     chr12:4649098-4687554 +  12p13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NDUFA9  -     12p13.32   [Description]    (hg19-Feb_2009)
EnsemblNDUFA9 - 12p13.32 [CytoView hg19]  NDUFA9 - 12p13.32 [CytoView hg38]
Mapping of homologs : NCBINDUFA9 [Mapview hg19]  NDUFA9 [Mapview hg38]
OMIM256000   603834   
Gene and transcription
Genbank (Entrez)AF050641 AK291067 AK308588 BC003351 BC009311
RefSeq transcript (Entrez)NM_005002
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDUFA9
Cluster EST : UnigeneHs.75227 [ NCBI ]
CGAP (NCI)Hs.75227
Gene ExpressionNDUFA9 [ NCBI-GEO ]   NDUFA9 [ EBI - ARRAY_EXPRESS ]   NDUFA9 [ SEEK ]   NDUFA9 [ MEM ]
Gene Expression Viewer (FireBrowse)NDUFA9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4704
GTEX Portal (Tissue expression)NDUFA9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16795   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16795  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16795
Splice isoforms : SwissVarQ16795
PhosPhoSitePlusQ16795
Domains : Interpro (EBI)Epimerase_deHydtase    NAD(P)-bd_dom   
Domain families : Pfam (Sanger)Epimerase (PF01370)   
Domain families : Pfam (NCBI)pfam01370   
Conserved Domain (NCBI)NDUFA9
DMDM Disease mutations4704
Blocks (Seattle)NDUFA9
SuperfamilyQ16795
Peptide AtlasQ16795
HPRD04832
IPIIPI00003968   IPI00792728   IPI00797261   IPI01013897   
Protein Interaction databases
DIP (DOE-UCLA)Q16795
IntAct (EBI)Q16795
BioGRIDNDUFA9
STRING (EMBL)NDUFA9
ZODIACNDUFA9
Ontologies - Pathways
QuickGOQ16795
Ontology : AmiGONADH dehydrogenase activity  NADH dehydrogenase activity  protein binding  nucleus  nucleoplasm  mitochondrion  mitochondrial respiratory chain complex I  mitochondrial matrix  mitochondrial matrix  mitochondrial electron transport, NADH to ubiquinone  mitochondrial electron transport, NADH to ubiquinone  sodium ion transport  NADH dehydrogenase (ubiquinone) activity  mitochondrial membrane  protein complex binding  mitochondrial respiratory chain complex I assembly  coenzyme binding  ubiquinone-6 biosynthetic process  
Ontology : EGO-EBINADH dehydrogenase activity  NADH dehydrogenase activity  protein binding  nucleus  nucleoplasm  mitochondrion  mitochondrial respiratory chain complex I  mitochondrial matrix  mitochondrial matrix  mitochondrial electron transport, NADH to ubiquinone  mitochondrial electron transport, NADH to ubiquinone  sodium ion transport  NADH dehydrogenase (ubiquinone) activity  mitochondrial membrane  protein complex binding  mitochondrial respiratory chain complex I assembly  coenzyme binding  ubiquinone-6 biosynthetic process  
Pathways : KEGGOxidative phosphorylation    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkNDUFA9
Atlas of Cancer Signalling NetworkNDUFA9
Wikipedia pathwaysNDUFA9
Orthology - Evolution
OrthoDB4704
Phylogenetic Trees/Animal Genes : TreeFamNDUFA9
HOVERGENQ16795
HOGENOMQ16795
Homologs : HomoloGeneNDUFA9
Homology/Alignments : Family Browser (UCSC)NDUFA9
Gene fusions - Rearrangements
Tumor Fusion PortalNDUFA9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDUFA9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDUFA9
dbVarNDUFA9
ClinVarNDUFA9
1000_GenomesNDUFA9 
Exome Variant ServerNDUFA9
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP4704
Genomic Variants (DGV)NDUFA9 [DGVbeta]
DECIPHERNDUFA9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNDUFA9 
Mutations
ICGC Data PortalNDUFA9 
TCGA Data PortalNDUFA9 
Broad Tumor PortalNDUFA9
OASIS PortalNDUFA9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDUFA9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNDUFA9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NDUFA9
DgiDB (Drug Gene Interaction Database)NDUFA9
DoCM (Curated mutations)NDUFA9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDUFA9 (select a term)
intoGenNDUFA9
Cancer3DNDUFA9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM256000    603834   
Orphanet19814   
DisGeNETNDUFA9
MedgenNDUFA9
Genetic Testing Registry NDUFA9
NextProtQ16795 [Medical]
TSGene4704
GENETestsNDUFA9
Target ValidationNDUFA9
Huge Navigator NDUFA9 [HugePedia]
snp3D : Map Gene to Disease4704
BioCentury BCIQNDUFA9
ClinGenNDUFA9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4704
Chemical/Pharm GKB GenePA31499
Clinical trialNDUFA9
Miscellaneous
canSAR (ICR)NDUFA9 (select the gene name)
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDUFA9
EVEXNDUFA9
GoPubMedNDUFA9
iHOPNDUFA9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:27:02 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.