Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NDUFAF3 (NADH:ubiquinone oxidoreductase complex assembly factor 3)

Identity

Alias_namesC3orf60
chromosome 3 open reading frame 60
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3
NADH dehydrogenase (ubiquinone) complex I, assembly factor 3
Alias_symbol (synonym)MGC10527
DKFZP564J0123
E3-3
2P1
Other alias
HGNC (Hugo) NDUFAF3
LocusID (NCBI) 25915
Atlas_Id 70766
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49021641 and ends at 49023493 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SH3BP1 (22q13.1) / NDUFAF3 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDUFAF3   29918
Cards
Entrez_Gene (NCBI)NDUFAF3  25915  NADH:ubiquinone oxidoreductase complex assembly factor 3
Aliases2P1; C3orf60; E3-3
GeneCards (Weizmann)NDUFAF3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:49021641-49023493 [Contig_View]  NDUFAF3 [Vega]
TCGA cBioPortalNDUFAF3
AceView (NCBI)NDUFAF3
Genatlas (Paris)NDUFAF3
WikiGenes25915
SOURCE (Princeton)NDUFAF3
Genetics Home Reference (NIH)NDUFAF3
Genomic and cartography
GoldenPath hg38 (UCSC)NDUFAF3  -     chr3:49021641-49023493 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NDUFAF3  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblNDUFAF3 - 3p21.31 [CytoView hg19]  NDUFAF3 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBINDUFAF3 [Mapview hg19]  NDUFAF3 [Mapview hg38]
OMIM252010   612911   
Gene and transcription
Genbank (Entrez)AA907148 AL049955 BC002873 BC111004 BM354128
RefSeq transcript (Entrez)NM_199069 NM_199070 NM_199073 NM_199074 NM_199417
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDUFAF3
Cluster EST : UnigeneHs.31387 [ NCBI ]
CGAP (NCI)Hs.31387
Gene ExpressionNDUFAF3 [ NCBI-GEO ]   NDUFAF3 [ EBI - ARRAY_EXPRESS ]   NDUFAF3 [ SEEK ]   NDUFAF3 [ MEM ]
Gene Expression Viewer (FireBrowse)NDUFAF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25915
GTEX Portal (Tissue expression)NDUFAF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BU61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BU61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BU61
Splice isoforms : SwissVarQ9BU61
PhosPhoSitePlusQ9BU61
Domains : Interpro (EBI)NDUF3    NDUFAF3/AAMDC   
Domain families : Pfam (Sanger)DUF498 (PF04430)   
Domain families : Pfam (NCBI)pfam04430   
Conserved Domain (NCBI)NDUFAF3
DMDM Disease mutations25915
Blocks (Seattle)NDUFAF3
SuperfamilyQ9BU61
Peptide AtlasQ9BU61
HPRD16809
IPIIPI00399053   IPI00793724   
Protein Interaction databases
DIP (DOE-UCLA)Q9BU61
IntAct (EBI)Q9BU61
BioGRIDNDUFAF3
STRING (EMBL)NDUFAF3
ZODIACNDUFAF3
Ontologies - Pathways
QuickGOQ9BU61
Ontology : AmiGOprotein binding  nucleus  mitochondrial inner membrane  mitochondrial inner membrane  mitochondrial respiratory chain complex I assembly  mitochondrial respiratory chain complex I assembly  
Ontology : EGO-EBIprotein binding  nucleus  mitochondrial inner membrane  mitochondrial inner membrane  mitochondrial respiratory chain complex I assembly  mitochondrial respiratory chain complex I assembly  
NDEx NetworkNDUFAF3
Atlas of Cancer Signalling NetworkNDUFAF3
Wikipedia pathwaysNDUFAF3
Orthology - Evolution
OrthoDB25915
Phylogenetic Trees/Animal Genes : TreeFamNDUFAF3
HOVERGENQ9BU61
HOGENOMQ9BU61
Homologs : HomoloGeneNDUFAF3
Homology/Alignments : Family Browser (UCSC)NDUFAF3
Gene fusions - Rearrangements
Tumor Fusion PortalNDUFAF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDUFAF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDUFAF3
dbVarNDUFAF3
ClinVarNDUFAF3
1000_GenomesNDUFAF3 
Exome Variant ServerNDUFAF3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP25915
Genomic Variants (DGV)NDUFAF3 [DGVbeta]
DECIPHERNDUFAF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNDUFAF3 
Mutations
ICGC Data PortalNDUFAF3 
TCGA Data PortalNDUFAF3 
Broad Tumor PortalNDUFAF3
OASIS PortalNDUFAF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDUFAF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNDUFAF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NDUFAF3
DgiDB (Drug Gene Interaction Database)NDUFAF3
DoCM (Curated mutations)NDUFAF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDUFAF3 (select a term)
intoGenNDUFAF3
Cancer3DNDUFAF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM252010    612911   
Orphanet369   
DisGeNETNDUFAF3
MedgenNDUFAF3
Genetic Testing Registry NDUFAF3
NextProtQ9BU61 [Medical]
TSGene25915
GENETestsNDUFAF3
Target ValidationNDUFAF3
Huge Navigator NDUFAF3 [HugePedia]
snp3D : Map Gene to Disease25915
BioCentury BCIQNDUFAF3
ClinGenNDUFAF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25915
Chemical/Pharm GKB GenePA164723795
Clinical trialNDUFAF3
Miscellaneous
canSAR (ICR)NDUFAF3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDUFAF3
EVEXNDUFAF3
GoPubMedNDUFAF3
iHOPNDUFAF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:08:35 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.