Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NDUFAF7 (NADH:ubiquinone oxidoreductase complex assembly factor 7)

Identity

Alias_namesC2orf56
chromosome 2 open reading frame 56
NADH dehydrogenase (ubiquinone) complex I, assembly factor 7
Alias_symbol (synonym)PRO1853
MidA
Other alias
HGNC (Hugo) NDUFAF7
LocusID (NCBI) 55471
Atlas_Id 54495
Location 2p22.2  [Link to chromosome band 2p22]
Location_base_pair Starts at 37231631 and ends at 37249161 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NDUFAF7 (2p22.2) / PRKD3 (2p22.2)NDUFAF7 (2p22.2) / SAMD4B (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDUFAF7   28816
Cards
Entrez_Gene (NCBI)NDUFAF7  55471  NADH:ubiquinone oxidoreductase complex assembly factor 7
AliasesC2orf56; MidA; PRO1853
GeneCards (Weizmann)NDUFAF7
Ensembl hg19 (Hinxton)ENSG00000003509 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000003509 [Gene_View]  chr2:37231631-37249161 [Contig_View]  NDUFAF7 [Vega]
ICGC DataPortalENSG00000003509
TCGA cBioPortalNDUFAF7
AceView (NCBI)NDUFAF7
Genatlas (Paris)NDUFAF7
WikiGenes55471
SOURCE (Princeton)NDUFAF7
Genetics Home Reference (NIH)NDUFAF7
Genomic and cartography
GoldenPath hg38 (UCSC)NDUFAF7  -     chr2:37231631-37249161 +  2p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NDUFAF7  -     2p22.2   [Description]    (hg19-Feb_2009)
EnsemblNDUFAF7 - 2p22.2 [CytoView hg19]  NDUFAF7 - 2p22.2 [CytoView hg38]
Mapping of homologs : NCBINDUFAF7 [Mapview hg19]  NDUFAF7 [Mapview hg38]
OMIM615898   
Gene and transcription
Genbank (Entrez)AK294240 AK299015 AK302150 AK303555 BC004548
RefSeq transcript (Entrez)NM_001083946 NM_001350024 NM_001350025 NM_001350027 NM_018607 NM_144736
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDUFAF7
Cluster EST : UnigeneHs.433466 [ NCBI ]
CGAP (NCI)Hs.433466
Alternative Splicing GalleryENSG00000003509
Gene ExpressionNDUFAF7 [ NCBI-GEO ]   NDUFAF7 [ EBI - ARRAY_EXPRESS ]   NDUFAF7 [ SEEK ]   NDUFAF7 [ MEM ]
Gene Expression Viewer (FireBrowse)NDUFAF7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55471
GTEX Portal (Tissue expression)NDUFAF7
Human Protein AtlasENSG00000003509-NDUFAF7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L592   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L592  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L592
Splice isoforms : SwissVarQ7L592
PhosPhoSitePlusQ7L592
Domains : Interpro (EBI)NDUFAF7    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltransf_28 (PF02636)   
Domain families : Pfam (NCBI)pfam02636   
Conserved Domain (NCBI)NDUFAF7
DMDM Disease mutations55471
Blocks (Seattle)NDUFAF7
SuperfamilyQ7L592
Human Protein Atlas [tissue]ENSG00000003509-NDUFAF7 [tissue]
Peptide AtlasQ7L592
HPRD15180
IPIIPI00412670   IPI00375685   IPI00892645   IPI00910109   IPI00894307   IPI00892526   IPI00893404   IPI00893286   IPI00893170   
Protein Interaction databases
DIP (DOE-UCLA)Q7L592
IntAct (EBI)Q7L592
FunCoupENSG00000003509
BioGRIDNDUFAF7
STRING (EMBL)NDUFAF7
ZODIACNDUFAF7
Ontologies - Pathways
QuickGOQ7L592
Ontology : AmiGOprotein binding  extracellular space  mitochondrion  mitochondrial matrix  methyltransferase activity  enzyme binding  peptidyl-arginine methylation, to symmetrical-dimethyl arginine  mitochondrial respiratory chain complex I assembly  mitochondrial respiratory chain complex I assembly  protein-arginine omega-N symmetric methyltransferase activity  ATP metabolic process  
Ontology : EGO-EBIprotein binding  extracellular space  mitochondrion  mitochondrial matrix  methyltransferase activity  enzyme binding  peptidyl-arginine methylation, to symmetrical-dimethyl arginine  mitochondrial respiratory chain complex I assembly  mitochondrial respiratory chain complex I assembly  protein-arginine omega-N symmetric methyltransferase activity  ATP metabolic process  
NDEx NetworkNDUFAF7
Atlas of Cancer Signalling NetworkNDUFAF7
Wikipedia pathwaysNDUFAF7
Orthology - Evolution
OrthoDB55471
GeneTree (enSembl)ENSG00000003509
Phylogenetic Trees/Animal Genes : TreeFamNDUFAF7
HOVERGENQ7L592
HOGENOMQ7L592
Homologs : HomoloGeneNDUFAF7
Homology/Alignments : Family Browser (UCSC)NDUFAF7
Gene fusions - Rearrangements
Fusion : MitelmanNDUFAF7/PRKD3 [2p22.2/2p22.2]  
Fusion : MitelmanNDUFAF7/SAMD4B [2p22.2/19q13.2]  [t(2;19)(p22;q13)]  
Tumor Fusion PortalNDUFAF7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDUFAF7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDUFAF7
dbVarNDUFAF7
ClinVarNDUFAF7
1000_GenomesNDUFAF7 
Exome Variant ServerNDUFAF7
ExAC (Exome Aggregation Consortium)ENSG00000003509
GNOMAD BrowserENSG00000003509
Genetic variants : HAPMAP55471
Genomic Variants (DGV)NDUFAF7 [DGVbeta]
DECIPHERNDUFAF7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNDUFAF7 
Mutations
ICGC Data PortalNDUFAF7 
TCGA Data PortalNDUFAF7 
Broad Tumor PortalNDUFAF7
OASIS PortalNDUFAF7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNDUFAF7
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NDUFAF7
DgiDB (Drug Gene Interaction Database)NDUFAF7
DoCM (Curated mutations)NDUFAF7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDUFAF7 (select a term)
intoGenNDUFAF7
Cancer3DNDUFAF7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615898   
Orphanet
DisGeNETNDUFAF7
MedgenNDUFAF7
Genetic Testing Registry NDUFAF7
NextProtQ7L592 [Medical]
TSGene55471
GENETestsNDUFAF7
Target ValidationNDUFAF7
Huge Navigator NDUFAF7 [HugePedia]
snp3D : Map Gene to Disease55471
BioCentury BCIQNDUFAF7
ClinGenNDUFAF7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55471
Chemical/Pharm GKB GenePA162379266
Clinical trialNDUFAF7
Miscellaneous
canSAR (ICR)NDUFAF7 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDUFAF7
EVEXNDUFAF7
GoPubMedNDUFAF7
iHOPNDUFAF7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:49:24 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.