Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NDUFB3 (NADH:ubiquinone oxidoreductase subunit B3)

Identity

Alias_namesNADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa
Alias_symbol (synonym)B12
Other aliasCI-B12
HGNC (Hugo) NDUFB3
LocusID (NCBI) 4709
Atlas_Id 70774
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 201071739 and ends at 201085751 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDUFB3   7698
Cards
Entrez_Gene (NCBI)NDUFB3  4709  NADH:ubiquinone oxidoreductase subunit B3
AliasesB12; CI-B12
GeneCards (Weizmann)NDUFB3
Ensembl hg19 (Hinxton)ENSG00000119013 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119013 [Gene_View]  chr2:201071739-201085751 [Contig_View]  NDUFB3 [Vega]
ICGC DataPortalENSG00000119013
TCGA cBioPortalNDUFB3
AceView (NCBI)NDUFB3
Genatlas (Paris)NDUFB3
WikiGenes4709
SOURCE (Princeton)NDUFB3
Genetics Home Reference (NIH)NDUFB3
Genomic and cartography
GoldenPath hg38 (UCSC)NDUFB3  -     chr2:201071739-201085751 +  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NDUFB3  -     2q33.1   [Description]    (hg19-Feb_2009)
EnsemblNDUFB3 - 2q33.1 [CytoView hg19]  NDUFB3 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBINDUFB3 [Mapview hg19]  NDUFB3 [Mapview hg38]
OMIM252010   603839   
Gene and transcription
Genbank (Entrez)AF035839 AF047183 BC018183 BM848639 BU188560
RefSeq transcript (Entrez)NM_001257102 NM_002491
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDUFB3
Cluster EST : UnigeneHs.109760 [ NCBI ]
CGAP (NCI)Hs.109760
Alternative Splicing GalleryENSG00000119013
Gene ExpressionNDUFB3 [ NCBI-GEO ]   NDUFB3 [ EBI - ARRAY_EXPRESS ]   NDUFB3 [ SEEK ]   NDUFB3 [ MEM ]
Gene Expression Viewer (FireBrowse)NDUFB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4709
GTEX Portal (Tissue expression)NDUFB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43676   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43676  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43676
Splice isoforms : SwissVarO43676
PhosPhoSitePlusO43676
Domains : Interpro (EBI)NDUFB3   
Domain families : Pfam (Sanger)NDUF_B12 (PF08122)   
Domain families : Pfam (NCBI)pfam08122   
Conserved Domain (NCBI)NDUFB3
DMDM Disease mutations4709
Blocks (Seattle)NDUFB3
SuperfamilyO43676
Human Protein AtlasENSG00000119013
Peptide AtlasO43676
HPRD11954
IPIIPI00219383   IPI00925753   
Protein Interaction databases
DIP (DOE-UCLA)O43676
IntAct (EBI)O43676
FunCoupENSG00000119013
BioGRIDNDUFB3
STRING (EMBL)NDUFB3
ZODIACNDUFB3
Ontologies - Pathways
QuickGOO43676
Ontology : AmiGOmitochondrial inner membrane  mitochondrial respiratory chain complex I  mitochondrial respiratory chain complex I  mitochondrial electron transport, NADH to ubiquinone  mitochondrial electron transport, NADH to ubiquinone  NADH dehydrogenase (ubiquinone) activity  integral component of membrane  mitochondrial respiratory chain complex I assembly  extracellular exosome  
Ontology : EGO-EBImitochondrial inner membrane  mitochondrial respiratory chain complex I  mitochondrial respiratory chain complex I  mitochondrial electron transport, NADH to ubiquinone  mitochondrial electron transport, NADH to ubiquinone  NADH dehydrogenase (ubiquinone) activity  integral component of membrane  mitochondrial respiratory chain complex I assembly  extracellular exosome  
Pathways : KEGGOxidative phosphorylation    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkNDUFB3
Atlas of Cancer Signalling NetworkNDUFB3
Wikipedia pathwaysNDUFB3
Orthology - Evolution
OrthoDB4709
GeneTree (enSembl)ENSG00000119013
Phylogenetic Trees/Animal Genes : TreeFamNDUFB3
HOVERGENO43676
HOGENOMO43676
Homologs : HomoloGeneNDUFB3
Homology/Alignments : Family Browser (UCSC)NDUFB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDUFB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDUFB3
dbVarNDUFB3
ClinVarNDUFB3
1000_GenomesNDUFB3 
Exome Variant ServerNDUFB3
ExAC (Exome Aggregation Consortium)NDUFB3 (select the gene name)
Genetic variants : HAPMAP4709
Genomic Variants (DGV)NDUFB3 [DGVbeta]
DECIPHERNDUFB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNDUFB3 
Mutations
ICGC Data PortalNDUFB3 
TCGA Data PortalNDUFB3 
Broad Tumor PortalNDUFB3
OASIS PortalNDUFB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDUFB3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNDUFB3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NDUFB3
DgiDB (Drug Gene Interaction Database)NDUFB3
DoCM (Curated mutations)NDUFB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDUFB3 (select a term)
intoGenNDUFB3
Cancer3DNDUFB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM252010    603839   
Orphanet369   
MedgenNDUFB3
Genetic Testing Registry NDUFB3
NextProtO43676 [Medical]
TSGene4709
GENETestsNDUFB3
Huge Navigator NDUFB3 [HugePedia]
snp3D : Map Gene to Disease4709
BioCentury BCIQNDUFB3
ClinGenNDUFB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4709
Chemical/Pharm GKB GenePA31504
Clinical trialNDUFB3
Miscellaneous
canSAR (ICR)NDUFB3 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDUFB3
EVEXNDUFB3
GoPubMedNDUFB3
iHOPNDUFB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:44:47 CEST 2017

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