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NDUFB9 (NADH:ubiquinone oxidoreductase subunit B9)

Identity

Alias_namesNADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 (22kD, B22)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa
Alias_symbol (synonym)B22
UQOR22
LYRM3
Other aliasCI-B22
HGNC (Hugo) NDUFB9
LocusID (NCBI) 4715
Atlas_Id 55858
Location 8q24.13  [Link to chromosome band 8q24]
Location_base_pair Starts at 125551343 and ends at 125562227 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NDUFB9 (8q24.13) / FLJ43315 (-)NDUFB9 (8q24.13) / TDRKH (1q21.3)RUNDC1 (17q21.31) / NDUFB9 (8q24.13)
YWHAZ (8q22.3) / NDUFB9 (8q24.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDUFB9   7704
Cards
Entrez_Gene (NCBI)NDUFB9  4715  NADH:ubiquinone oxidoreductase subunit B9
AliasesB22; CI-B22; LYRM3; UQOR22
GeneCards (Weizmann)NDUFB9
Ensembl hg19 (Hinxton)ENSG00000147684 [Gene_View]  chr8:125551343-125562227 [Contig_View]  NDUFB9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147684 [Gene_View]  chr8:125551343-125562227 [Contig_View]  NDUFB9 [Vega]
ICGC DataPortalENSG00000147684
TCGA cBioPortalNDUFB9
AceView (NCBI)NDUFB9
Genatlas (Paris)NDUFB9
WikiGenes4715
SOURCE (Princeton)NDUFB9
Genetics Home Reference (NIH)NDUFB9
Genomic and cartography
GoldenPath hg19 (UCSC)NDUFB9  -     chr8:125551343-125562227 +  8q24.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NDUFB9  -     8q24.13   [Description]    (hg38-Dec_2013)
EnsemblNDUFB9 - 8q24.13 [CytoView hg19]  NDUFB9 - 8q24.13 [CytoView hg38]
Mapping of homologs : NCBINDUFB9 [Mapview hg19]  NDUFB9 [Mapview hg38]
OMIM252010   601445   
Gene and transcription
Genbank (Entrez)AF044956 AF067168 AF261090 AI907018 AK026538
RefSeq transcript (Entrez)NM_001278645 NM_001278646 NM_001311168 NM_005005
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDUFB9
Cluster EST : UnigeneHs.15977 [ NCBI ]
CGAP (NCI)Hs.15977
Alternative Splicing GalleryENSG00000147684
Gene ExpressionNDUFB9 [ NCBI-GEO ]   NDUFB9 [ EBI - ARRAY_EXPRESS ]   NDUFB9 [ SEEK ]   NDUFB9 [ MEM ]
Gene Expression Viewer (FireBrowse)NDUFB9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4715
GTEX Portal (Tissue expression)NDUFB9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6M9
Splice isoforms : SwissVarQ9Y6M9
PhosPhoSitePlusQ9Y6M9
Domains : Interpro (EBI)Complex1_LYR    NDUFB9   
Domain families : Pfam (Sanger)Complex1_LYR (PF05347)   
Domain families : Pfam (NCBI)pfam05347   
Conserved Domain (NCBI)NDUFB9
DMDM Disease mutations4715
Blocks (Seattle)NDUFB9
SuperfamilyQ9Y6M9
Human Protein AtlasENSG00000147684
Peptide AtlasQ9Y6M9
HPRD03264
IPIIPI00255052   IPI00984951   IPI00790064   IPI00790752   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6M9
IntAct (EBI)Q9Y6M9
FunCoupENSG00000147684
BioGRIDNDUFB9
STRING (EMBL)NDUFB9
ZODIACNDUFB9
Ontologies - Pathways
QuickGOQ9Y6M9
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial inner membrane  mitochondrial respiratory chain complex I  mitochondrial respiratory chain complex I  mitochondrial electron transport, NADH to ubiquinone  mitochondrial electron transport, NADH to ubiquinone  sensory perception of sound  NADH dehydrogenase (ubiquinone) activity  mitochondrial respiratory chain complex I assembly  extracellular exosome  mitophagy in response to mitochondrial depolarization  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial inner membrane  mitochondrial respiratory chain complex I  mitochondrial respiratory chain complex I  mitochondrial electron transport, NADH to ubiquinone  mitochondrial electron transport, NADH to ubiquinone  sensory perception of sound  NADH dehydrogenase (ubiquinone) activity  mitochondrial respiratory chain complex I assembly  extracellular exosome  mitophagy in response to mitochondrial depolarization  
Pathways : KEGGOxidative phosphorylation    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkNDUFB9
Atlas of Cancer Signalling NetworkNDUFB9
Wikipedia pathwaysNDUFB9
Orthology - Evolution
OrthoDB4715
GeneTree (enSembl)ENSG00000147684
Phylogenetic Trees/Animal Genes : TreeFamNDUFB9
HOVERGENQ9Y6M9
HOGENOMQ9Y6M9
Homologs : HomoloGeneNDUFB9
Homology/Alignments : Family Browser (UCSC)NDUFB9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDUFB9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDUFB9
dbVarNDUFB9
ClinVarNDUFB9
1000_GenomesNDUFB9 
Exome Variant ServerNDUFB9
ExAC (Exome Aggregation Consortium)NDUFB9 (select the gene name)
Genetic variants : HAPMAP4715
Genomic Variants (DGV)NDUFB9 [DGVbeta]
DECIPHER (Syndromes)8:125551343-125562227  ENSG00000147684
CONAN: Copy Number AnalysisNDUFB9 
Mutations
ICGC Data PortalNDUFB9 
TCGA Data PortalNDUFB9 
Broad Tumor PortalNDUFB9
OASIS PortalNDUFB9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDUFB9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNDUFB9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NDUFB9
DgiDB (Drug Gene Interaction Database)NDUFB9
DoCM (Curated mutations)NDUFB9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDUFB9 (select a term)
intoGenNDUFB9
Cancer3DNDUFB9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM252010    601445   
Orphanet369   
MedgenNDUFB9
Genetic Testing Registry NDUFB9
NextProtQ9Y6M9 [Medical]
TSGene4715
GENETestsNDUFB9
Huge Navigator NDUFB9 [HugePedia]
snp3D : Map Gene to Disease4715
BioCentury BCIQNDUFB9
ClinGenNDUFB9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4715
Chemical/Pharm GKB GenePA31515
Clinical trialNDUFB9
Miscellaneous
canSAR (ICR)NDUFB9 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDUFB9
EVEXNDUFB9
GoPubMedNDUFB9
iHOPNDUFB9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:18:30 CET 2017

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