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NEAT1 (nuclear paraspeckle assembly transcript 1)

Identity

Alias (NCBI)LINC00084
NCRNA00084
TncRNA
VINC
HGNC (Hugo) NEAT1
HGNC Alias symbTncRNA
MENepsilon/beta
LINC00084
VINC
HGNC Alias nametrophoblast derived non-protein coding RNA
 nuclear enriched abundant transcript 1
 long intergenic non-protein coding RNA 84
 virus inducible non-coding RNA
HGNC Previous nameNCRNA00084
HGNC Previous namenon-protein coding RNA 84
 nuclear paraspeckle assembly transcript 1 (non-protein coding)
LocusID (NCBI) 283131
Atlas_Id 54497
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65422798 and ends at 65445538 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADD1 (4p16.3) / NEAT1 (11q13.1)ANKDD1A (15q22.31) / NEAT1 (11q13.1)C6orf62 (6p22.3) / NEAT1 (11q13.1)
CD4 (12p13.31) / NEAT1 (11q13.1)CLDN4 (7q11.23) / NEAT1 (11q13.1)DAG1 (3p21.31) / NEAT1 (11q13.1)
DOT1L (19p13.3) / NEAT1 (11q13.1)EGF (4q25) / NEAT1 (11q13.1)HLA-DPA1 (6p21.32) / NEAT1 (11q13.1)
KCNIP1 (5q35.1) / NEAT1 (11q13.1)LOC100505761 () / NEAT1 (11q13.1)NDRG1 (8q24.22) / NEAT1 (11q13.1)
NEAT1 (11q13.1) / ALDH3A2 (17p11.2)NEAT1 (11q13.1) / AMPD2 (1p13.3)NEAT1 (11q13.1) / C3 (19p13.3)
NEAT1 (11q13.1) / C4orf19 (4p14)NEAT1 (11q13.1) / CHD8 (14q11.2)NEAT1 (11q13.1) / CSF3R (1p34.3)
NEAT1 (11q13.1) / ERBB3 (12q13.2)NEAT1 (11q13.1) / IFNAR2 (21q22.11)NEAT1 (11q13.1) / KCNH2 (7q36.1)
NEAT1 (11q13.1) / MBP (18q23)NEAT1 (11q13.1) / NEAT1 (11q13.1)NEAT1 (11q13.1) / PHLDB1 (11q23.3)
NEAT1 (11q13.1) / PITPNM2 (12q24.31)NEAT1 (11q13.1) / PLEC (8q24.3)NEAT1 (11q13.1) / PPM1A (14q23.1)
NEAT1 (11q13.1) / PPP6R2 (22q13.33)NEAT1 (11q13.1) / PRKCZ (1p36.33)NEAT1 (11q13.1) / SF1 (11q13.1)
NEAT1 (11q13.1) / TXNL1 (18q21.31)PCGF3 (4p16.3) / NEAT1 (11q13.1)PCIF1 (20q13.12) / NEAT1 (11q13.1)
PDIA3P1 (1q21.1) / NEAT1 (11q13.1)PPDPF (20q13.33) / NEAT1 (11q13.1)PXDN (2p25.3) / NEAT1 (11q13.1)
RBBP4 (1p35.1) / NEAT1 (11q13.1)SLC12A7 (5p15.33) / NEAT1 (11q13.1)SRP68 (17q25.1) / NEAT1 (11q13.1)
TBCD (17q25.3) / NEAT1 (11q13.1)TF (3q22.1) / NEAT1 (11q13.1)ZNF529 (19q13.12) / NEAT1 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NEAT1   30815
Cards
Entrez_Gene (NCBI)NEAT1    nuclear paraspeckle assembly transcript 1
AliasesLINC00084; NCRNA00084; TncRNA; VINC
GeneCards (Weizmann)NEAT1
Ensembl hg19 (Hinxton)ENSG00000245532 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000245532 [Gene_View]  ENSG00000245532 [Sequence]  chr11:65422798-65445538 [Contig_View]  NEAT1 [Vega]
ICGC DataPortalENSG00000245532
TCGA cBioPortalNEAT1
AceView (NCBI)NEAT1
Genatlas (Paris)NEAT1
SOURCE (Princeton)NEAT1
Genetics Home Reference (NIH)NEAT1
Genomic and cartography
GoldenPath hg38 (UCSC)NEAT1  -     chr11:65422798-65445538 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NEAT1  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathNEAT1 - 11q13.1 [CytoView hg19]  NEAT1 - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000245532
genome Data Viewer NCBINEAT1 [Mapview hg19]  
OMIM612769   
Gene and transcription
Genbank (Entrez)AF080092 AF508303 AI590745 AK027191 EF177379
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NEAT1
Alternative Splicing GalleryENSG00000245532
Gene ExpressionNEAT1 [ NCBI-GEO ]   NEAT1 [ EBI - ARRAY_EXPRESS ]   NEAT1 [ SEEK ]   NEAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)NEAT1 [ Firebrowse - Broad ]
GenevisibleExpression of NEAT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283131
GTEX Portal (Tissue expression)NEAT1
Human Protein AtlasENSG00000245532-NEAT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NEAT1
Blocks (Seattle)NEAT1
Human Protein Atlas [tissue]ENSG00000245532-NEAT1 [tissue]
IPIIPI00884095   
Protein Interaction databases
BioGRIDNEAT1
STRING (EMBL)NEAT1
ZODIACNEAT1
Ontologies - Pathways
Litterature
PubMed192 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNEAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:28:35 CET 2021
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