Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NEAT1 (nuclear paraspeckle assembly transcript 1)

Identity

Alias_namesNCRNA00084
non-protein coding RNA 84
Alias_symbol (synonym)TncRNA
MENepsilon/beta
LINC00084
VINC
Other alias
HGNC (Hugo) NEAT1
LocusID (NCBI) 283131
Atlas_Id 54497
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65422798 and ends at 65445538 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADD1 (4p16.3) / NEAT1 (11q13.1)ANKDD1A (15q22.31) / NEAT1 (11q13.1)C6orf62 (6p22.3) / NEAT1 (11q13.1)
CD4 (12p13.31) / NEAT1 (11q13.1)CLDN4 (7q11.23) / NEAT1 (11q13.1)DAG1 (3p21.31) / NEAT1 (11q13.1)
DOT1L (19p13.3) / NEAT1 (11q13.1)EGF (4q25) / NEAT1 (11q13.1)HLA-DPA1 (6p21.32) / NEAT1 (11q13.1)
KCNIP1 (5q35.1) / NEAT1 (11q13.1)LOC100505761 () / NEAT1 (11q13.1)NDRG1 (8q24.22) / NEAT1 (11q13.1)
NEAT1 (11q13.1) / ALDH3A2 (17p11.2)NEAT1 (11q13.1) / AMPD2 (1p13.3)NEAT1 (11q13.1) / C3 (19p13.3)
NEAT1 (11q13.1) / C4orf19 (4p14)NEAT1 (11q13.1) / CHD8 (14q11.2)NEAT1 (11q13.1) / CSF3R (1p34.3)
NEAT1 (11q13.1) / ERBB3 (12q13.2)NEAT1 (11q13.1) / IFNAR2 (21q22.11)NEAT1 (11q13.1) / KCNH2 (7q36.1)
NEAT1 (11q13.1) / MBP (18q23)NEAT1 (11q13.1) / NEAT1 (11q13.1)NEAT1 (11q13.1) / PHLDB1 (11q23.3)
NEAT1 (11q13.1) / PITPNM2 (12q24.31)NEAT1 (11q13.1) / PLEC (8q24.3)NEAT1 (11q13.1) / PPM1A (14q23.1)
NEAT1 (11q13.1) / PPP6R2 (22q13.33)NEAT1 (11q13.1) / PRKCZ (1p36.33)NEAT1 (11q13.1) / SF1 (11q13.1)
NEAT1 (11q13.1) / TXNL1 (18q21.31)PCGF3 (4p16.3) / NEAT1 (11q13.1)PCIF1 (20q13.12) / NEAT1 (11q13.1)
PDIA3P1 (1q21.1) / NEAT1 (11q13.1)PPDPF (20q13.33) / NEAT1 (11q13.1)PXDN (2p25.3) / NEAT1 (11q13.1)
RBBP4 (1p35.1) / NEAT1 (11q13.1)SLC12A7 (5p15.33) / NEAT1 (11q13.1)SRP68 (17q25.1) / NEAT1 (11q13.1)
TBCD (17q25.3) / NEAT1 (11q13.1)TF (3q22.1) / NEAT1 (11q13.1)ZNF529 (19q13.12) / NEAT1 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NEAT1   30815
Cards
Entrez_Gene (NCBI)NEAT1  283131  nuclear paraspeckle assembly transcript 1
AliasesLINC00084; NCRNA00084; TncRNA; VINC
GeneCards (Weizmann)NEAT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr11:65422798-65445538 [Contig_View]  NEAT1 [Vega]
TCGA cBioPortalNEAT1
AceView (NCBI)NEAT1
Genatlas (Paris)NEAT1
WikiGenes283131
SOURCE (Princeton)NEAT1
Genetics Home Reference (NIH)NEAT1
Genomic and cartography
GoldenPath hg38 (UCSC)NEAT1  -     chr11:65422798-65445538 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NEAT1  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblNEAT1 - 11q13.1 [CytoView hg19]  NEAT1 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBINEAT1 [Mapview hg19]  NEAT1 [Mapview hg38]
OMIM612769   
Gene and transcription
Genbank (Entrez)AF080092 AF508303 AI590745 AK027191 EF177379
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NEAT1
Cluster EST : UnigeneHs.523789 [ NCBI ]
CGAP (NCI)Hs.523789
Gene ExpressionNEAT1 [ NCBI-GEO ]   NEAT1 [ EBI - ARRAY_EXPRESS ]   NEAT1 [ SEEK ]   NEAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)NEAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)283131
GTEX Portal (Tissue expression)NEAT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NEAT1
DMDM Disease mutations283131
Blocks (Seattle)NEAT1
IPIIPI00884095   
Protein Interaction databases
BioGRIDNEAT1
STRING (EMBL)NEAT1
ZODIACNEAT1
Ontologies - Pathways
Huge Navigator NEAT1 [HugePedia]
snp3D : Map Gene to Disease283131
BioCentury BCIQNEAT1
ClinGenNEAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283131
Chemical/Pharm GKB GenePA165543519
Clinical trialNEAT1
Miscellaneous
canSAR (ICR)NEAT1 (select the gene name)
Probes
Litterature
PubMed78 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNEAT1
EVEXNEAT1
GoPubMedNEAT1
iHOPNEAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 27 11:40:18 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.