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NECAB2 (N-terminal EF-hand calcium binding protein 2)

Identity

Alias_namesEFCBP2
EF-hand calcium binding protein 2
Other aliasstip-2
HGNC (Hugo) NECAB2
LocusID (NCBI) 54550
Atlas_Id 70793
Location 16q23.3  [Link to chromosome band 16q23]
Location_base_pair Starts at 83968632 and ends at 84002774 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KIAA0556 (16p12.1) / NECAB2 (16q23.3)TOM1L2 (17p11.2) / NECAB2 (16q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NECAB2   23746
Cards
Entrez_Gene (NCBI)NECAB2  54550  N-terminal EF-hand calcium binding protein 2
AliasesEFCBP2; stip-2
GeneCards (Weizmann)NECAB2
Ensembl hg19 (Hinxton)ENSG00000103154 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103154 [Gene_View]  chr16:83968632-84002774 [Contig_View]  NECAB2 [Vega]
ICGC DataPortalENSG00000103154
TCGA cBioPortalNECAB2
AceView (NCBI)NECAB2
Genatlas (Paris)NECAB2
WikiGenes54550
SOURCE (Princeton)NECAB2
Genetics Home Reference (NIH)NECAB2
Genomic and cartography
GoldenPath hg38 (UCSC)NECAB2  -     chr16:83968632-84002774 +  16q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NECAB2  -     16q23.3   [Description]    (hg19-Feb_2009)
EnsemblNECAB2 - 16q23.3 [CytoView hg19]  NECAB2 - 16q23.3 [CytoView hg38]
Mapping of homologs : NCBINECAB2 [Mapview hg19]  NECAB2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF070637 AF193758 AK127376 AY299331 BC016979
RefSeq transcript (Entrez)NM_001329748 NM_001329749 NM_019065
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NECAB2
Cluster EST : UnigeneHs.140950 [ NCBI ]
CGAP (NCI)Hs.140950
Alternative Splicing GalleryENSG00000103154
Gene ExpressionNECAB2 [ NCBI-GEO ]   NECAB2 [ EBI - ARRAY_EXPRESS ]   NECAB2 [ SEEK ]   NECAB2 [ MEM ]
Gene Expression Viewer (FireBrowse)NECAB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54550
GTEX Portal (Tissue expression)NECAB2
Human Protein AtlasENSG00000103154-NECAB2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6G3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6G3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6G3
Splice isoforms : SwissVarQ7Z6G3
PhosPhoSitePlusQ7Z6G3
Domaine pattern : Prosite (Expaxy)ABM (PS51725)    EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)ABM_dom    Dimeric_a/b-barrel    EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)ABM (PF03992)    EF-hand_5 (PF13202)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam03992    pfam13202    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)NECAB2
DMDM Disease mutations54550
Blocks (Seattle)NECAB2
SuperfamilyQ7Z6G3
Human Protein Atlas [tissue]ENSG00000103154-NECAB2 [tissue]
Peptide AtlasQ7Z6G3
HPRD13263
IPIIPI00641920   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6G3
IntAct (EBI)Q7Z6G3
FunCoupENSG00000103154
BioGRIDNECAB2
STRING (EMBL)NECAB2
ZODIACNECAB2
Ontologies - Pathways
QuickGOQ7Z6G3
Ontology : AmiGOcalcium ion binding  protein binding  cytoplasm  
Ontology : EGO-EBIcalcium ion binding  protein binding  cytoplasm  
NDEx NetworkNECAB2
Atlas of Cancer Signalling NetworkNECAB2
Wikipedia pathwaysNECAB2
Orthology - Evolution
OrthoDB54550
GeneTree (enSembl)ENSG00000103154
Phylogenetic Trees/Animal Genes : TreeFamNECAB2
HOVERGENQ7Z6G3
HOGENOMQ7Z6G3
Homologs : HomoloGeneNECAB2
Homology/Alignments : Family Browser (UCSC)NECAB2
Gene fusions - Rearrangements
Tumor Fusion PortalNECAB2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNECAB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NECAB2
dbVarNECAB2
ClinVarNECAB2
1000_GenomesNECAB2 
Exome Variant ServerNECAB2
ExAC (Exome Aggregation Consortium)ENSG00000103154
GNOMAD BrowserENSG00000103154
Genetic variants : HAPMAP54550
Genomic Variants (DGV)NECAB2 [DGVbeta]
DECIPHERNECAB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNECAB2 
Mutations
ICGC Data PortalNECAB2 
TCGA Data PortalNECAB2 
Broad Tumor PortalNECAB2
OASIS PortalNECAB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNECAB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNECAB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NECAB2
DgiDB (Drug Gene Interaction Database)NECAB2
DoCM (Curated mutations)NECAB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NECAB2 (select a term)
intoGenNECAB2
Cancer3DNECAB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNECAB2
MedgenNECAB2
Genetic Testing Registry NECAB2
NextProtQ7Z6G3 [Medical]
TSGene54550
GENETestsNECAB2
Target ValidationNECAB2
Huge Navigator NECAB2 [HugePedia]
snp3D : Map Gene to Disease54550
BioCentury BCIQNECAB2
ClinGenNECAB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54550
Chemical/Pharm GKB GenePA162397412
Clinical trialNECAB2
Miscellaneous
canSAR (ICR)NECAB2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNECAB2
EVEXNECAB2
GoPubMedNECAB2
iHOPNECAB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:33:59 CET 2017

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