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NECAP1 (NECAP endocytosis associated 1)

Identity

Alias_symbol (synonym)DKFZP566B183
Other aliasEIEE21
HGNC (Hugo) NECAP1
LocusID (NCBI) 25977
Atlas_Id 70795
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 8082211 and ends at 8097777 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FOXJ3 (1p34.2) / NECAP1 (12p13.31)NECAP1 (12p13.31) / ANK1 (8p11.21)NECAP1 (12p13.31) / ETS1 (11q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NECAP1   24539
Cards
Entrez_Gene (NCBI)NECAP1  25977  NECAP endocytosis associated 1
AliasesEIEE21
GeneCards (Weizmann)NECAP1
Ensembl hg19 (Hinxton)ENSG00000089818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000089818 [Gene_View]  chr12:8082211-8097777 [Contig_View]  NECAP1 [Vega]
ICGC DataPortalENSG00000089818
TCGA cBioPortalNECAP1
AceView (NCBI)NECAP1
Genatlas (Paris)NECAP1
WikiGenes25977
SOURCE (Princeton)NECAP1
Genetics Home Reference (NIH)NECAP1
Genomic and cartography
GoldenPath hg38 (UCSC)NECAP1  -     chr12:8082211-8097777 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NECAP1  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblNECAP1 - 12p13.31 [CytoView hg19]  NECAP1 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBINECAP1 [Mapview hg19]  NECAP1 [Mapview hg38]
OMIM611623   615833   
Gene and transcription
Genbank (Entrez)AI688397 AK074858 AK074880 AK074923 AK075013
RefSeq transcript (Entrez)NM_015509
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NECAP1
Cluster EST : UnigeneHs.555927 [ NCBI ]
CGAP (NCI)Hs.555927
Alternative Splicing GalleryENSG00000089818
Gene ExpressionNECAP1 [ NCBI-GEO ]   NECAP1 [ EBI - ARRAY_EXPRESS ]   NECAP1 [ SEEK ]   NECAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)NECAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25977
GTEX Portal (Tissue expression)NECAP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NC96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NC96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NC96
Splice isoforms : SwissVarQ8NC96
PhosPhoSitePlusQ8NC96
Domains : Interpro (EBI)NECAP_PHear    PH_dom-like   
Domain families : Pfam (Sanger)DUF1681 (PF07933)   
Domain families : Pfam (NCBI)pfam07933   
Conserved Domain (NCBI)NECAP1
DMDM Disease mutations25977
Blocks (Seattle)NECAP1
SuperfamilyQ8NC96
Human Protein AtlasENSG00000089818
Peptide AtlasQ8NC96
HPRD14819
IPIIPI00170916   IPI01025934   IPI00795573   IPI00554745   IPI01013986   
Protein Interaction databases
DIP (DOE-UCLA)Q8NC96
IntAct (EBI)Q8NC96
FunCoupENSG00000089818
BioGRIDNECAP1
STRING (EMBL)NECAP1
ZODIACNECAP1
Ontologies - Pathways
QuickGOQ8NC96
Ontology : AmiGOcytosol  plasma membrane  endocytosis  protein transport  clathrin-coated vesicle membrane  membrane organization  
Ontology : EGO-EBIcytosol  plasma membrane  endocytosis  protein transport  clathrin-coated vesicle membrane  membrane organization  
NDEx NetworkNECAP1
Atlas of Cancer Signalling NetworkNECAP1
Wikipedia pathwaysNECAP1
Orthology - Evolution
OrthoDB25977
GeneTree (enSembl)ENSG00000089818
Phylogenetic Trees/Animal Genes : TreeFamNECAP1
HOVERGENQ8NC96
HOGENOMQ8NC96
Homologs : HomoloGeneNECAP1
Homology/Alignments : Family Browser (UCSC)NECAP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNECAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NECAP1
dbVarNECAP1
ClinVarNECAP1
1000_GenomesNECAP1 
Exome Variant ServerNECAP1
ExAC (Exome Aggregation Consortium)NECAP1 (select the gene name)
Genetic variants : HAPMAP25977
Genomic Variants (DGV)NECAP1 [DGVbeta]
DECIPHERNECAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNECAP1 
Mutations
ICGC Data PortalNECAP1 
TCGA Data PortalNECAP1 
Broad Tumor PortalNECAP1
OASIS PortalNECAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNECAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNECAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NECAP1
DgiDB (Drug Gene Interaction Database)NECAP1
DoCM (Curated mutations)NECAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NECAP1 (select a term)
intoGenNECAP1
Cancer3DNECAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611623    615833   
Orphanet23427   
MedgenNECAP1
Genetic Testing Registry NECAP1
NextProtQ8NC96 [Medical]
TSGene25977
GENETestsNECAP1
Target ValidationNECAP1
Huge Navigator NECAP1 [HugePedia]
snp3D : Map Gene to Disease25977
BioCentury BCIQNECAP1
ClinGenNECAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25977
Chemical/Pharm GKB GenePA142671267
Clinical trialNECAP1
Miscellaneous
canSAR (ICR)NECAP1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNECAP1
EVEXNECAP1
GoPubMedNECAP1
iHOPNECAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:32 CEST 2017

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