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NECAP2 (NECAP endocytosis associated 2)

Identity

Alias_symbol (synonym)FLJ10420
Other alias-
HGNC (Hugo) NECAP2
LocusID (NCBI) 55707
Atlas_Id 40583
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16440672 and ends at 16460089 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAPZB (1p36.13) / NECAP2 (1p36.13)NECAP2 (1p36.13) / EPHA2 (1p36.13)NECAP2 (1p36.13) / NECAP2 (1p36.13)
NECAP2 1p36.13 / EPHA2 1p36.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NECAP2   25528
Cards
Entrez_Gene (NCBI)NECAP2  55707  NECAP endocytosis associated 2
Aliases
GeneCards (Weizmann)NECAP2
Ensembl hg19 (Hinxton)ENSG00000157191 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157191 [Gene_View]  chr1:16440672-16460089 [Contig_View]  NECAP2 [Vega]
ICGC DataPortalENSG00000157191
TCGA cBioPortalNECAP2
AceView (NCBI)NECAP2
Genatlas (Paris)NECAP2
WikiGenes55707
SOURCE (Princeton)NECAP2
Genetics Home Reference (NIH)NECAP2
Genomic and cartography
GoldenPath hg38 (UCSC)NECAP2  -     chr1:16440672-16460089 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NECAP2  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblNECAP2 - 1p36.13 [CytoView hg19]  NECAP2 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBINECAP2 [Mapview hg19]  NECAP2 [Mapview hg38]
OMIM611624   
Gene and transcription
Genbank (Entrez)AK001282 AK021938 AK023545 AK024468 AK223344
RefSeq transcript (Entrez)NM_001145277 NM_001145278 NM_018090
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NECAP2
Cluster EST : UnigeneHs.437385 [ NCBI ]
CGAP (NCI)Hs.437385
Alternative Splicing GalleryENSG00000157191
Gene ExpressionNECAP2 [ NCBI-GEO ]   NECAP2 [ EBI - ARRAY_EXPRESS ]   NECAP2 [ SEEK ]   NECAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)NECAP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55707
GTEX Portal (Tissue expression)NECAP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVZ3
Splice isoforms : SwissVarQ9NVZ3
PhosPhoSitePlusQ9NVZ3
Domains : Interpro (EBI)NECAP_PHear    PH_dom-like   
Domain families : Pfam (Sanger)DUF1681 (PF07933)   
Domain families : Pfam (NCBI)pfam07933   
Conserved Domain (NCBI)NECAP2
DMDM Disease mutations55707
Blocks (Seattle)NECAP2
SuperfamilyQ9NVZ3
Human Protein AtlasENSG00000157191
Peptide AtlasQ9NVZ3
HPRD07674
IPIIPI00018188   IPI00073436   IPI00922268   IPI00965384   IPI00965696   IPI00965130   IPI00967036   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVZ3
IntAct (EBI)Q9NVZ3
FunCoupENSG00000157191
BioGRIDNECAP2
STRING (EMBL)NECAP2
ZODIACNECAP2
Ontologies - Pathways
QuickGOQ9NVZ3
Ontology : AmiGOintracellular  plasma membrane  clathrin-coated pit  endocytosis  protein transport  clathrin vesicle coat  
Ontology : EGO-EBIintracellular  plasma membrane  clathrin-coated pit  endocytosis  protein transport  clathrin vesicle coat  
NDEx NetworkNECAP2
Atlas of Cancer Signalling NetworkNECAP2
Wikipedia pathwaysNECAP2
Orthology - Evolution
OrthoDB55707
GeneTree (enSembl)ENSG00000157191
Phylogenetic Trees/Animal Genes : TreeFamNECAP2
HOVERGENQ9NVZ3
HOGENOMQ9NVZ3
Homologs : HomoloGeneNECAP2
Homology/Alignments : Family Browser (UCSC)NECAP2
Gene fusions - Rearrangements
Fusion : MitelmanNECAP2/EPHA2 [1p36.13/1p36.13]  
Fusion: TCGANECAP2 1p36.13 EPHA2 1p36.13 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNECAP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NECAP2
dbVarNECAP2
ClinVarNECAP2
1000_GenomesNECAP2 
Exome Variant ServerNECAP2
ExAC (Exome Aggregation Consortium)NECAP2 (select the gene name)
Genetic variants : HAPMAP55707
Genomic Variants (DGV)NECAP2 [DGVbeta]
DECIPHERNECAP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNECAP2 
Mutations
ICGC Data PortalNECAP2 
TCGA Data PortalNECAP2 
Broad Tumor PortalNECAP2
OASIS PortalNECAP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNECAP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNECAP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NECAP2
DgiDB (Drug Gene Interaction Database)NECAP2
DoCM (Curated mutations)NECAP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NECAP2 (select a term)
intoGenNECAP2
Cancer3DNECAP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611624   
Orphanet
MedgenNECAP2
Genetic Testing Registry NECAP2
NextProtQ9NVZ3 [Medical]
TSGene55707
GENETestsNECAP2
Target ValidationNECAP2
Huge Navigator NECAP2 [HugePedia]
snp3D : Map Gene to Disease55707
BioCentury BCIQNECAP2
ClinGenNECAP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55707
Chemical/Pharm GKB GenePA142671268
Clinical trialNECAP2
Miscellaneous
canSAR (ICR)NECAP2 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNECAP2
EVEXNECAP2
GoPubMedNECAP2
iHOPNECAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:08:54 CEST 2017

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