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NEDD1 (NEDD1 gamma-tubulin ring complex targeting factor)

Identity

Alias (NCBI)GCP-WD
TUBGCP7
HGNC (Hugo) NEDD1
HGNC Alias symbGCP-WD
TUBGCP7
HGNC Alias nametubulin gamma complex associated protein 7
HGNC Previous nameneural precursor cell expressed, developmentally down-regulated 1
LocusID (NCBI) 121441
Atlas_Id 53473
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 96907257 and ends at 96953779 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MCUR1 (6p23) / NEDD1 (12q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NEDD1   7723
Cards
Entrez_Gene (NCBI)NEDD1    NEDD1 gamma-tubulin ring complex targeting factor
AliasesGCP-WD; TUBGCP7
GeneCards (Weizmann)NEDD1
Ensembl hg19 (Hinxton)ENSG00000139350 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139350 [Gene_View]  ENSG00000139350 [Sequence]  chr12:96907257-96953779 [Contig_View]  NEDD1 [Vega]
ICGC DataPortalENSG00000139350
TCGA cBioPortalNEDD1
AceView (NCBI)NEDD1
Genatlas (Paris)NEDD1
SOURCE (Princeton)NEDD1
Genetics Home Reference (NIH)NEDD1
Genomic and cartography
GoldenPath hg38 (UCSC)NEDD1  -     chr12:96907257-96953779 +  12q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NEDD1  -     12q23.1   [Description]    (hg19-Feb_2009)
GoldenPathNEDD1 - 12q23.1 [CytoView hg19]  NEDD1 - 12q23.1 [CytoView hg38]
ImmunoBaseENSG00000139350
Genome Data Viewer NCBINEDD1 [Mapview hg19]  
OMIM600372   
Gene and transcription
Genbank (Entrez)AA236927 AK093221 AK290058 AK303656 AK315821
RefSeq transcript (Entrez)NM_001135175 NM_001135176 NM_001135177 NM_152905
Consensus coding sequences : CCDS (NCBI)NEDD1
Gene ExpressionNEDD1 [ NCBI-GEO ]   NEDD1 [ EBI - ARRAY_EXPRESS ]   NEDD1 [ SEEK ]   NEDD1 [ MEM ]
Gene Expression Viewer (FireBrowse)NEDD1 [ Firebrowse - Broad ]
GenevisibleExpression of NEDD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121441
GTEX Portal (Tissue expression)NEDD1
Human Protein AtlasENSG00000139350-NEDD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHV4
PhosPhoSitePlusQ8NHV4
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)NEDD1
SuperfamilyQ8NHV4
AlphaFold pdb e-kbQ8NHV4   
Human Protein Atlas [tissue]ENSG00000139350-NEDD1 [tissue]
HPRD02655
Protein Interaction databases
DIP (DOE-UCLA)Q8NHV4
IntAct (EBI)Q8NHV4
BioGRIDNEDD1
STRING (EMBL)NEDD1
ZODIACNEDD1
Ontologies - Pathways
QuickGOQ8NHV4
Ontology : AmiGOG2/M transition of mitotic cell cycle  pericentriolar material  spindle pole  protein binding  nucleoplasm  centrosome  centriole  cytosol  plasma membrane  regulation of G2/M transition of mitotic cell cycle  ciliary basal body  cell division  protein localization to centrosome  ciliary basal body-plasma membrane docking  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  pericentriolar material  spindle pole  protein binding  nucleoplasm  centrosome  centriole  cytosol  plasma membrane  regulation of G2/M transition of mitotic cell cycle  ciliary basal body  cell division  protein localization to centrosome  ciliary basal body-plasma membrane docking  
NDEx NetworkNEDD1
Atlas of Cancer Signalling NetworkNEDD1
Wikipedia pathwaysNEDD1
Orthology - Evolution
OrthoDB121441
GeneTree (enSembl)ENSG00000139350
Phylogenetic Trees/Animal Genes : TreeFamNEDD1
Homologs : HomoloGeneNEDD1
Homology/Alignments : Family Browser (UCSC)NEDD1
Gene fusions - Rearrangements
Fusion : QuiverNEDD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNEDD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NEDD1
dbVarNEDD1
ClinVarNEDD1
MonarchNEDD1
1000_GenomesNEDD1 
Exome Variant ServerNEDD1
GNOMAD BrowserENSG00000139350
Varsome BrowserNEDD1
ACMGNEDD1 variants
VarityQ8NHV4
Genomic Variants (DGV)NEDD1 [DGVbeta]
DECIPHERNEDD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNEDD1 
Mutations
ICGC Data PortalNEDD1 
TCGA Data PortalNEDD1 
Broad Tumor PortalNEDD1
OASIS PortalNEDD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNEDD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNEDD1
Mutations and Diseases : HGMDNEDD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNEDD1
DgiDB (Drug Gene Interaction Database)NEDD1
DoCM (Curated mutations)NEDD1
CIViC (Clinical Interpretations of Variants in Cancer)NEDD1
Cancer3DNEDD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600372   
Orphanet
DisGeNETNEDD1
MedgenNEDD1
Genetic Testing Registry NEDD1
NextProtQ8NHV4 [Medical]
GENETestsNEDD1
Target ValidationNEDD1
Huge Navigator NEDD1 [HugePedia]
ClinGenNEDD1
Clinical trials, drugs, therapy
MyCancerGenomeNEDD1
Protein Interactions : CTDNEDD1
Pharm GKB GenePA31531
PharosQ8NHV4
Clinical trialNEDD1
Miscellaneous
canSAR (ICR)NEDD1
HarmonizomeNEDD1
DataMed IndexNEDD1
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNEDD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:22:28 CEST 2021

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