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NEDD1 (neural precursor cell expressed, developmentally down-regulated 1)

Identity

Alias_symbol (synonym)GCP-WD
TUBGCP7
Other alias
HGNC (Hugo) NEDD1
LocusID (NCBI) 121441
Atlas_Id 53473
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 96907466 and ends at 96953691 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MCUR1 (6p23) / NEDD1 (12q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NEDD1   7723
Cards
Entrez_Gene (NCBI)NEDD1  121441  neural precursor cell expressed, developmentally down-regulated 1
AliasesGCP-WD; TUBGCP7
GeneCards (Weizmann)NEDD1
Ensembl hg19 (Hinxton)ENSG00000139350 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139350 [Gene_View]  chr12:96907466-96953691 [Contig_View]  NEDD1 [Vega]
ICGC DataPortalENSG00000139350
TCGA cBioPortalNEDD1
AceView (NCBI)NEDD1
Genatlas (Paris)NEDD1
WikiGenes121441
SOURCE (Princeton)NEDD1
Genetics Home Reference (NIH)NEDD1
Genomic and cartography
GoldenPath hg38 (UCSC)NEDD1  -     chr12:96907466-96953691 +  12q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NEDD1  -     12q23.1   [Description]    (hg19-Feb_2009)
EnsemblNEDD1 - 12q23.1 [CytoView hg19]  NEDD1 - 12q23.1 [CytoView hg38]
Mapping of homologs : NCBINEDD1 [Mapview hg19]  NEDD1 [Mapview hg38]
OMIM600372   
Gene and transcription
Genbank (Entrez)AA236927 AK093221 AK290058 AK303656 AK315821
RefSeq transcript (Entrez)NM_001135175 NM_001135176 NM_001135177 NM_152905
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NEDD1
Cluster EST : UnigeneHs.270084 [ NCBI ]
CGAP (NCI)Hs.270084
Alternative Splicing GalleryENSG00000139350
Gene ExpressionNEDD1 [ NCBI-GEO ]   NEDD1 [ EBI - ARRAY_EXPRESS ]   NEDD1 [ SEEK ]   NEDD1 [ MEM ]
Gene Expression Viewer (FireBrowse)NEDD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121441
GTEX Portal (Tissue expression)NEDD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHV4
Splice isoforms : SwissVarQ8NHV4
PhosPhoSitePlusQ8NHV4
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)NEDD1
DMDM Disease mutations121441
Blocks (Seattle)NEDD1
SuperfamilyQ8NHV4
Human Protein AtlasENSG00000139350
Peptide AtlasQ8NHV4
HPRD02655
IPIIPI00169345   IPI00789363   IPI01025757   IPI01025887   IPI01025338   IPI01025562   IPI01025216   IPI00791509   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHV4
IntAct (EBI)Q8NHV4
FunCoupENSG00000139350
BioGRIDNEDD1
STRING (EMBL)NEDD1
ZODIACNEDD1
Ontologies - Pathways
QuickGOQ8NHV4
Ontology : AmiGOG2/M transition of mitotic cell cycle  pericentriolar material  spindle pole  protein binding  centrosome  centriole  cytosol  ciliary basal body  apical part of cell  cell division  protein localization to centrosome  ciliary basal body docking  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  pericentriolar material  spindle pole  protein binding  centrosome  centriole  cytosol  ciliary basal body  apical part of cell  cell division  protein localization to centrosome  ciliary basal body docking  
NDEx NetworkNEDD1
Atlas of Cancer Signalling NetworkNEDD1
Wikipedia pathwaysNEDD1
Orthology - Evolution
OrthoDB121441
GeneTree (enSembl)ENSG00000139350
Phylogenetic Trees/Animal Genes : TreeFamNEDD1
HOVERGENQ8NHV4
HOGENOMQ8NHV4
Homologs : HomoloGeneNEDD1
Homology/Alignments : Family Browser (UCSC)NEDD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNEDD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NEDD1
dbVarNEDD1
ClinVarNEDD1
1000_GenomesNEDD1 
Exome Variant ServerNEDD1
ExAC (Exome Aggregation Consortium)NEDD1 (select the gene name)
Genetic variants : HAPMAP121441
Genomic Variants (DGV)NEDD1 [DGVbeta]
DECIPHERNEDD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNEDD1 
Mutations
ICGC Data PortalNEDD1 
TCGA Data PortalNEDD1 
Broad Tumor PortalNEDD1
OASIS PortalNEDD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNEDD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNEDD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NEDD1
DgiDB (Drug Gene Interaction Database)NEDD1
DoCM (Curated mutations)NEDD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NEDD1 (select a term)
intoGenNEDD1
Cancer3DNEDD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600372   
Orphanet
MedgenNEDD1
Genetic Testing Registry NEDD1
NextProtQ8NHV4 [Medical]
TSGene121441
GENETestsNEDD1
Huge Navigator NEDD1 [HugePedia]
snp3D : Map Gene to Disease121441
BioCentury BCIQNEDD1
ClinGenNEDD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121441
Chemical/Pharm GKB GenePA31531
Clinical trialNEDD1
Miscellaneous
canSAR (ICR)NEDD1 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNEDD1
EVEXNEDD1
GoPubMedNEDD1
iHOPNEDD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:28:22 CEST 2017

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