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NEIL3 (nei endonuclease VIII-like 3 (E. coli))

Identity

Other namesFGP2
FPG2
NEI3
hFPG2
hNEI3
HGNC (Hugo) NEIL3
LocusID (NCBI) 55247
Location 4q34.3
Location_base_pair Starts at 178230991 and ends at 178284092 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NEIL3   24573
Entrez_Gene (NCBI)NEIL3  55247  nei endonuclease VIII-like 3 (E. coli)
Cards
GeneCards (Weizmann)NEIL3
Ensembl (Hinxton)ENSG00000109674 [Gene_View]  chr4:178230991-178284092 [Contig_View]  NEIL3 [Vega]
AceView (NCBI)NEIL3
Genatlas (Paris)NEIL3
SOURCE (Stanford)NM_018248
Genomic and cartography
GoldenPath (UCSC)NEIL3  -  4q34.3   chr4:178230991-178284092 +  4q34.3   [Description]    (hg19-Feb_2009)
EnsemblNEIL3 - 4q34.3 [CytoView]
Mapping of homologs : NCBINEIL3 [Mapview]
OMIM608934   
Gene and transcription
Genbank (Entrez)AB079071 AI419161 AK001720 AK307692 BC025954
RefSeq transcript (SRS)NM_018248
RefSeq transcript (Entrez)NM_018248
RefSeq genomic (SRS)AC_000136 NC_000004 NC_018915 NT_016354 NW_001838921 NW_004078021
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_016354 NW_001838921 NW_004078021
Consensus coding sequences : CCDS (NCBI)NEIL3
Cluster EST : UnigeneHs.405467 [ SRS ] Hs.405467 [ NCBI ]
CGAP (NCI)Hs.405467
Alternative Splicing : Fast-db (Paris)GSHG0022993
Alternative Splicing GalleryENSG00000109674
Gene ExpressionNEIL3 [ NCBI-GEO ]   NEIL3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAT5 (SRS) Q8TAT5 (Uniprot)
NextProtQ8TAT5
With graphics : InterProQ8TAT5
Splice isoforms : SwissVarQ8TAT5(Swissvar)
Domaine pattern : Prosite (SRS)FPG_CAT (PS51068)    ZF_FPG_1 (PS01242)    ZF_FPG_2 (PS51066)    ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)   
Domaine pattern : Prosite (Expaxy)FPG_CAT (PS51068)    ZF_FPG_1 (PS01242)    ZF_FPG_2 (PS51066)    ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)   
Domains : Interpro (SRS)DNA_glyclase/AP_lyase_DNA-bd    DNA_glyclase_Znf_dom_DNA_BS    DNA_glycosylase/AP_lyase_cat    Ribosomal_S13-like_H2TH    Znf_DNA_glyclase/AP_lyase    Znf_GRF    Znf_RanBP2   
Domains : Interpro (EBI)DNA_glyclase/AP_lyase_DNA-bd    DNA_glyclase_Znf_dom_DNA_BS    DNA_glycosylase/AP_lyase_cat    Ribosomal_S13-like_H2TH    Znf_DNA_glyclase/AP_lyase    Znf_GRF    Znf_RanBP2   
Related proteins : CluSTrQ8TAT5
Domain families : Pfam (SRS)H2TH (PF06831)    zf-GRF (PF06839)    zf-RanBP (PF00641)   
Domain families : Pfam (Sanger)H2TH (PF06831)    zf-GRF (PF06839)    zf-RanBP (PF00641)   
Domain families : Pfam (NCBI)pfam06831    pfam06839    pfam00641   
Domain families : Smart (EMBL)ZnF_RBZ (SM00547)  
DMDM55247
Blocks (Seattle)Q8TAT5
Human Protein AtlasENSG00000109674
HPRD16407
IPIIPI00303135   IPI00964674   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAT5
IntAct (EBI)Q8TAT5
FunCoupENSG00000109674
REACTOMENEIL3
Protein Interaction Database55247
BioGRIDNEIL3
InParanoidQ8TAT5
Interologous Interaction database Q8TAT5
IntegromeDBNEIL3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NEIL3
SNP (GeneSNP Utah)NEIL3
SNP : HGBaseNEIL3
Genetic variants : HAPMAPNEIL3
Somatic Mutations in Cancer : COSMICNEIL3 
CONAN: Copy Number AnalysisNEIL3 
Mutations and Diseases : HGMDNEIL3
OMIM608934   
GENETests608934   
Disease Genetic AssociationNEIL3
Huge Navigator NEIL3 [HugePedia]  NEIL3 [HugeCancerGEM]
Genomic VariantsNEIL3  NEIL3 [DGVbeta]
snp3D : Map Gene to Disease55247
General knowledge
Homologs : HomoloGeneNEIL3
Homology/Alignments : Family Browser (UCSC)NEIL3
Phylogenetic Trees/Animal Genes : TreeFamNEIL3
Catalytic activity : Enzyme3.2.2.- [ Enzyme-Expasy ]   3.2.2.- [ Enzyme-SRS ]   3.2.2.- [ IntEnz-EBI ]   3.2.2.- [ BRENDA ]   3.2.2.- [ KEGG ]   
Chemical/Protein Interactions : CTD55247
Chemical/Pharm GKB GenePA134889634
Clinical trialNEIL3
Cancer Resource (Charite)ENSG00000109674
Ontology : AmiGObubble DNA binding  damaged DNA binding  double-stranded DNA binding  single-stranded DNA binding  DNA-(apurinic or apyrimidinic site) lyase activity  nucleus  base-excision repair  nucleotide-excision repair  zinc ion binding  DNA N-glycosylase activity  DNA N-glycosylase activity  metal ion binding  
Ontology : EGO-EBIbubble DNA binding  damaged DNA binding  double-stranded DNA binding  single-stranded DNA binding  DNA-(apurinic or apyrimidinic site) lyase activity  nucleus  base-excision repair  nucleotide-excision repair  zinc ion binding  DNA N-glycosylase activity  DNA N-glycosylase activity  metal ion binding  
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
PubGeneNEIL3
iHOPNEIL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:42:57 CEST 2013
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