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NELFCD (negative elongation factor complex member C/D)

Identity

Alias_namesTH1L
TH1-like (Drosophila homolog)
TH1-like (Drosophila)
Alias_symbol (synonym)HSPC130
TH1
NELF-C
NELF-D
Other alias
HGNC (Hugo) NELFCD
LocusID (NCBI) 51497
Atlas_Id 51720
Location 20q13.32  [Link to chromosome band 20q13]
Location_base_pair Starts at 57556263 and ends at 57570188 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NELFCD   15934
Cards
Entrez_Gene (NCBI)NELFCD  51497  negative elongation factor complex member C/D
AliasesHSPC130; NELF-C; NELF-D; TH1; 
TH1L
GeneCards (Weizmann)NELFCD
Ensembl hg19 (Hinxton)ENSG00000101158 [Gene_View]  chr20:57556263-57570188 [Contig_View]  NELFCD [Vega]
Ensembl hg38 (Hinxton)ENSG00000101158 [Gene_View]  chr20:57556263-57570188 [Contig_View]  NELFCD [Vega]
ICGC DataPortalENSG00000101158
TCGA cBioPortalNELFCD
AceView (NCBI)NELFCD
Genatlas (Paris)NELFCD
WikiGenes51497
SOURCE (Princeton)NELFCD
Genetics Home Reference (NIH)NELFCD
Genomic and cartography
GoldenPath hg19 (UCSC)NELFCD  -     chr20:57556263-57570188 +  20q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NELFCD  -     20q13.32   [Description]    (hg38-Dec_2013)
EnsemblNELFCD - 20q13.32 [CytoView hg19]  NELFCD - 20q13.32 [CytoView hg38]
Mapping of homologs : NCBINELFCD [Mapview hg19]  NELFCD [Mapview hg38]
OMIM605297   
Gene and transcription
Genbank (Entrez)AA831111 AF161479 AJ238374 AJ238375 AJ238376
RefSeq transcript (Entrez)NM_016397 NM_198976
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)NELFCD
Cluster EST : UnigeneHs.517148 [ NCBI ]
CGAP (NCI)Hs.517148
Alternative Splicing GalleryENSG00000101158
Gene ExpressionNELFCD [ NCBI-GEO ]   NELFCD [ EBI - ARRAY_EXPRESS ]   NELFCD [ SEEK ]   NELFCD [ MEM ]
Gene Expression Viewer (FireBrowse)NELFCD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51497
GTEX Portal (Tissue expression)NELFCD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXH7
Splice isoforms : SwissVarQ8IXH7
PhosPhoSitePlusQ8IXH7
Domains : Interpro (EBI)TH1   
Domain families : Pfam (Sanger)TH1 (PF04858)   
Domain families : Pfam (NCBI)pfam04858   
Conserved Domain (NCBI)NELFCD
DMDM Disease mutations51497
Blocks (Seattle)NELFCD
SuperfamilyQ8IXH7
Human Protein AtlasENSG00000101158
Peptide AtlasQ8IXH7
HPRD16096
IPIIPI00387090   IPI00759539   IPI00164949   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXH7
IntAct (EBI)Q8IXH7
FunCoupENSG00000101158
BioGRIDNELFCD
STRING (EMBL)NELFCD
ZODIACNELFCD
Ontologies - Pathways
QuickGOQ8IXH7
Ontology : AmiGOprotein binding  nucleoplasm  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  membrane  NELF complex  negative regulation of transcription, DNA-templated  positive regulation of viral transcription  
Ontology : EGO-EBIprotein binding  nucleoplasm  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  membrane  NELF complex  negative regulation of transcription, DNA-templated  positive regulation of viral transcription  
NDEx NetworkNELFCD
Atlas of Cancer Signalling NetworkNELFCD
Wikipedia pathwaysNELFCD
Orthology - Evolution
OrthoDB51497
GeneTree (enSembl)ENSG00000101158
Phylogenetic Trees/Animal Genes : TreeFamNELFCD
HOVERGENQ8IXH7
HOGENOMQ8IXH7
Homologs : HomoloGeneNELFCD
Homology/Alignments : Family Browser (UCSC)NELFCD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNELFCD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NELFCD
dbVarNELFCD
ClinVarNELFCD
1000_GenomesNELFCD 
Exome Variant ServerNELFCD
ExAC (Exome Aggregation Consortium)NELFCD (select the gene name)
Genetic variants : HAPMAP51497
Genomic Variants (DGV)NELFCD [DGVbeta]
DECIPHER (Syndromes)20:57556263-57570188  ENSG00000101158
CONAN: Copy Number AnalysisNELFCD 
Mutations
ICGC Data PortalNELFCD 
TCGA Data PortalNELFCD 
Broad Tumor PortalNELFCD
OASIS PortalNELFCD [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNELFCD
BioMutasearch NELFCD
DgiDB (Drug Gene Interaction Database)NELFCD
DoCM (Curated mutations)NELFCD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NELFCD (select a term)
intoGenNELFCD
Cancer3DNELFCD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605297   
Orphanet
MedgenNELFCD
Genetic Testing Registry NELFCD
NextProtQ8IXH7 [Medical]
TSGene51497
GENETestsNELFCD
Huge Navigator NELFCD [HugePedia]
snp3D : Map Gene to Disease51497
BioCentury BCIQNELFCD
ClinGenNELFCD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51497
Chemical/Pharm GKB GenePA38055
Clinical trialNELFCD
Miscellaneous
canSAR (ICR)NELFCD (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNELFCD
EVEXNELFCD
GoPubMedNELFCD
iHOPNELFCD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:05 CEST 2017

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