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NEMF (nuclear export mediator factor)

Identity

Alias_namesSDCCAG1
serologically defined colon cancer antigen 1
Alias_symbol (synonym)NY-CO-1
FLJ10051
Other alias
HGNC (Hugo) NEMF
LocusID (NCBI) 9147
Atlas_Id 42227
Location 14q21.3  [Link to chromosome band 14q21]
Location_base_pair Starts at 50250532 and ends at 50319791 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IER5L (9q34.11) / NEMF (14q21.3)LGR4 (11p14.1) / NEMF (14q21.3)NEMF (14q21.3) / CDKL1 (14q21.3)
NEMF (14q21.3) / FN1 (2q35)NEMF (14q21.3) / FOXO3 (6q21)NEMF (14q21.3) / GNB5 (15q21.2)
NEMF (14q21.3) / KIAA1462 (10p11.23)NEMF (14q21.3) / L2HGDH (14q21.3)NEMF (14q21.3) / LINC01588 (14q21.3)
NEMF (14q21.3) / LINC01599 (14q21.3)NEMF (14q21.3) / NEMF (14q21.3)NEMF (14q21.3) / PARM1 (4q13.3)
NEMF (14q21.3) / SOS2 (14q21.3)NEMF (14q21.3) / ST3GAL1 (8q24.22)NEMF (14q21.3) / VCPKMT (14q21.3)
NEMF (14q21.3) / WWOX (16q23.1)PPIL3 (2q33.1) / NEMF (14q21.3)TBRG4 (7p13) / NEMF (14q21.3)
USP4 (3p21.31) / NEMF (14q21.3)NEMF 14q21.3 C14orf182NEMF 14q21.3 / CDKL1 14q21.3
NEMF 14q21.3 METTL21DNEMF 14q21.3 / SOS2 14q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NEMF   10663
Cards
Entrez_Gene (NCBI)NEMF  9147  nuclear export mediator factor
AliasesNY-CO-1; SDCCAG1
GeneCards (Weizmann)NEMF
Ensembl hg19 (Hinxton)ENSG00000165525 [Gene_View]  chr14:50250532-50319791 [Contig_View]  NEMF [Vega]
Ensembl hg38 (Hinxton)ENSG00000165525 [Gene_View]  chr14:50250532-50319791 [Contig_View]  NEMF [Vega]
ICGC DataPortalENSG00000165525
TCGA cBioPortalNEMF
AceView (NCBI)NEMF
Genatlas (Paris)NEMF
WikiGenes9147
SOURCE (Princeton)NEMF
Genetics Home Reference (NIH)NEMF
Genomic and cartography
GoldenPath hg19 (UCSC)NEMF  -     chr14:50250532-50319791 -  14q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NEMF  -     14q21.3   [Description]    (hg38-Dec_2013)
EnsemblNEMF - 14q21.3 [CytoView hg19]  NEMF - 14q21.3 [CytoView hg38]
Mapping of homologs : NCBINEMF [Mapview hg19]  NEMF [Mapview hg38]
OMIM608378   
Gene and transcription
Genbank (Entrez)AF039687 AK000913 AK093783 AK293236 AK295010
RefSeq transcript (Entrez)NM_001301732 NM_004713
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)NEMF
Cluster EST : UnigeneHs.655964 [ NCBI ]
CGAP (NCI)Hs.655964
Alternative Splicing GalleryENSG00000165525
Gene ExpressionNEMF [ NCBI-GEO ]   NEMF [ EBI - ARRAY_EXPRESS ]   NEMF [ SEEK ]   NEMF [ MEM ]
Gene Expression Viewer (FireBrowse)NEMF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9147
GTEX Portal (Tissue expression)NEMF
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60524   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60524  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60524
Splice isoforms : SwissVarO60524
PhosPhoSitePlusO60524
Domains : Interpro (EBI)DUF3441    DUF814   
Domain families : Pfam (Sanger)DUF3441 (PF11923)    DUF814 (PF05670)   
Domain families : Pfam (NCBI)pfam11923    pfam05670   
Conserved Domain (NCBI)NEMF
DMDM Disease mutations9147
Blocks (Seattle)NEMF
PDB (SRS)3J92   
PDB (PDBSum)3J92   
PDB (IMB)3J92   
PDB (RSDB)3J92   
Structural Biology KnowledgeBase3J92   
SCOP (Structural Classification of Proteins)3J92   
CATH (Classification of proteins structures)3J92   
SuperfamilyO60524
Human Protein AtlasENSG00000165525
Peptide AtlasO60524
HPRD08494
IPIIPI00301618   IPI00377155   IPI01013468   IPI01013837   IPI01016067   IPI01016065   IPI01025100   IPI01026321   
Protein Interaction databases
DIP (DOE-UCLA)O60524
IntAct (EBI)O60524
FunCoupENSG00000165525
BioGRIDNEMF
STRING (EMBL)NEMF
ZODIACNEMF
Ontologies - Pathways
QuickGOO60524
Ontology : AmiGOnucleus  nuclear export  
Ontology : EGO-EBInucleus  nuclear export  
NDEx NetworkNEMF
Atlas of Cancer Signalling NetworkNEMF
Wikipedia pathwaysNEMF
Orthology - Evolution
OrthoDB9147
GeneTree (enSembl)ENSG00000165525
Phylogenetic Trees/Animal Genes : TreeFamNEMF
HOVERGENO60524
HOGENOMO60524
Homologs : HomoloGeneNEMF
Homology/Alignments : Family Browser (UCSC)NEMF
Gene fusions - Rearrangements
Fusion : MitelmanNEMF/CDKL1 [14q21.3/14q21.3]  
Fusion : MitelmanNEMF/LINC01588 [14q21.3/14q21.3]  [t(14;14)(q21;q21)]  
Fusion : MitelmanNEMF/SOS2 [14q21.3/14q21.3]  [t(14;14)(q21;q21)]  
Fusion : MitelmanNEMF/VCPKMT [14q21.3/14q21.3]  [t(14;14)(q21;q21)]  
Fusion: TCGANEMF 14q21.3 C14orf182 BRCA LUSC
Fusion: TCGANEMF 14q21.3 CDKL1 14q21.3 BRCA
Fusion: TCGANEMF 14q21.3 METTL21D PRAD
Fusion: TCGANEMF 14q21.3 SOS2 14q21.3 BRCA LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNEMF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NEMF
dbVarNEMF
ClinVarNEMF
1000_GenomesNEMF 
Exome Variant ServerNEMF
ExAC (Exome Aggregation Consortium)NEMF (select the gene name)
Genetic variants : HAPMAP9147
Genomic Variants (DGV)NEMF [DGVbeta]
DECIPHER (Syndromes)14:50250532-50319791  ENSG00000165525
CONAN: Copy Number AnalysisNEMF 
Mutations
ICGC Data PortalNEMF 
TCGA Data PortalNEMF 
Broad Tumor PortalNEMF
OASIS PortalNEMF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNEMF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNEMF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NEMF
DgiDB (Drug Gene Interaction Database)NEMF
DoCM (Curated mutations)NEMF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NEMF (select a term)
intoGenNEMF
Cancer3DNEMF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608378   
Orphanet
MedgenNEMF
Genetic Testing Registry NEMF
NextProtO60524 [Medical]
TSGene9147
GENETestsNEMF
Huge Navigator NEMF [HugePedia]
snp3D : Map Gene to Disease9147
BioCentury BCIQNEMF
ClinGenNEMF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9147
Chemical/Pharm GKB GenePA35593
Clinical trialNEMF
Miscellaneous
canSAR (ICR)NEMF (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNEMF
EVEXNEMF
GoPubMedNEMF
iHOPNEMF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:18:38 CET 2017

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