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NENF (neudesin neurotrophic factor)

Identity

Alias_namesneuron derived neurotrophic factor
Alias_symbol (synonym)CIR2
SCIRP10
SPUF
Other alias
HGNC (Hugo) NENF
LocusID (NCBI) 29937
Atlas_Id 55454
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 212432887 and ends at 212446379 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARHGAP24 (4q21.23) / NENF (1q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NENF   30384
Cards
Entrez_Gene (NCBI)NENF  29937  neudesin neurotrophic factor
AliasesCIR2; SCIRP10; SPUF
GeneCards (Weizmann)NENF
Ensembl hg19 (Hinxton)ENSG00000117691 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117691 [Gene_View]  chr1:212432887-212446379 [Contig_View]  NENF [Vega]
ICGC DataPortalENSG00000117691
TCGA cBioPortalNENF
AceView (NCBI)NENF
Genatlas (Paris)NENF
WikiGenes29937
SOURCE (Princeton)NENF
Genetics Home Reference (NIH)NENF
Genomic and cartography
GoldenPath hg38 (UCSC)NENF  -     chr1:212432887-212446379 +  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NENF  -     1q32.3   [Description]    (hg19-Feb_2009)
EnsemblNENF - 1q32.3 [CytoView hg19]  NENF - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBINENF [Mapview hg19]  NENF [Mapview hg38]
OMIM611874   
Gene and transcription
Genbank (Entrez)AB126219 AF000267 AF049672 AF173937 AK074431
RefSeq transcript (Entrez)NM_013349
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NENF
Cluster EST : UnigeneHs.461787 [ NCBI ]
CGAP (NCI)Hs.461787
Alternative Splicing GalleryENSG00000117691
Gene ExpressionNENF [ NCBI-GEO ]   NENF [ EBI - ARRAY_EXPRESS ]   NENF [ SEEK ]   NENF [ MEM ]
Gene Expression Viewer (FireBrowse)NENF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29937
GTEX Portal (Tissue expression)NENF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UMX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UMX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UMX5
Splice isoforms : SwissVarQ9UMX5
PhosPhoSitePlusQ9UMX5
Domains : Interpro (EBI)Cyt_B5-like_heme/steroid-bd   
Domain families : Pfam (Sanger)Cyt-b5 (PF00173)   
Domain families : Pfam (NCBI)pfam00173   
Domain families : Smart (EMBL)Cyt-b5 (SM01117)  
Conserved Domain (NCBI)NENF
DMDM Disease mutations29937
Blocks (Seattle)NENF
SuperfamilyQ9UMX5
Human Protein AtlasENSG00000117691
Peptide AtlasQ9UMX5
HPRD11603
IPIIPI00002525   
Protein Interaction databases
DIP (DOE-UCLA)Q9UMX5
IntAct (EBI)Q9UMX5
FunCoupENSG00000117691
BioGRIDNENF
STRING (EMBL)NENF
ZODIACNENF
Ontologies - Pathways
QuickGOQ9UMX5
Ontology : AmiGOextracellular space  growth factor activity  endomembrane system  membrane  negative regulation of appetite  positive regulation of MAPK cascade  metal ion binding  
Ontology : EGO-EBIextracellular space  growth factor activity  endomembrane system  membrane  negative regulation of appetite  positive regulation of MAPK cascade  metal ion binding  
NDEx NetworkNENF
Atlas of Cancer Signalling NetworkNENF
Wikipedia pathwaysNENF
Orthology - Evolution
OrthoDB29937
GeneTree (enSembl)ENSG00000117691
Phylogenetic Trees/Animal Genes : TreeFamNENF
HOVERGENQ9UMX5
HOGENOMQ9UMX5
Homologs : HomoloGeneNENF
Homology/Alignments : Family Browser (UCSC)NENF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNENF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NENF
dbVarNENF
ClinVarNENF
1000_GenomesNENF 
Exome Variant ServerNENF
ExAC (Exome Aggregation Consortium)NENF (select the gene name)
Genetic variants : HAPMAP29937
Genomic Variants (DGV)NENF [DGVbeta]
DECIPHERNENF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNENF 
Mutations
ICGC Data PortalNENF 
TCGA Data PortalNENF 
Broad Tumor PortalNENF
OASIS PortalNENF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNENF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNENF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NENF
DgiDB (Drug Gene Interaction Database)NENF
DoCM (Curated mutations)NENF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NENF (select a term)
intoGenNENF
Cancer3DNENF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611874   
Orphanet
MedgenNENF
Genetic Testing Registry NENF
NextProtQ9UMX5 [Medical]
TSGene29937
GENETestsNENF
Target ValidationNENF
Huge Navigator NENF [HugePedia]
snp3D : Map Gene to Disease29937
BioCentury BCIQNENF
ClinGenNENF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29937
Chemical/Pharm GKB GenePA142671266
Clinical trialNENF
Miscellaneous
canSAR (ICR)NENF (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNENF
EVEXNENF
GoPubMedNENF
iHOPNENF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:21:57 CEST 2017

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