Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NEPRO (nucleolus and neural progenitor protein)

Identity

Alias_namesC3orf17
chromosome 3 open reading frame 17
Alias_symbol (synonym)DKFZP434F2021
NET17
Other alias
HGNC (Hugo) NEPRO
LocusID (NCBI) 25871
Atlas_Id 78554
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 112721292 and ends at 112738580 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NEPRO   24496
Cards
Entrez_Gene (NCBI)NEPRO  25871  nucleolus and neural progenitor protein
AliasesC3orf17; NET17
GeneCards (Weizmann)NEPRO
Ensembl hg19 (Hinxton)ENSG00000163608 [Gene_View]  chr3:112721292-112738580 [Contig_View]  NEPRO [Vega]
Ensembl hg38 (Hinxton)ENSG00000163608 [Gene_View]  chr3:112721292-112738580 [Contig_View]  NEPRO [Vega]
ICGC DataPortalENSG00000163608
TCGA cBioPortalNEPRO
AceView (NCBI)NEPRO
Genatlas (Paris)NEPRO
WikiGenes25871
SOURCE (Princeton)NEPRO
Genetics Home Reference (NIH)NEPRO
Genomic and cartography
GoldenPath hg19 (UCSC)NEPRO  -     chr3:112721292-112738580 -  3q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NEPRO  -     3q13.2   [Description]    (hg38-Dec_2013)
EnsemblNEPRO - 3q13.2 [CytoView hg19]  NEPRO - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBINEPRO [Mapview hg19]  NEPRO [Mapview hg38]
OMIM617089   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001025072 NM_001025073 NM_001319109 NM_001319110 NM_001319111 NM_001319112 NM_001319114 NM_001319115 NM_015412
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NEPRO
Cluster EST : UnigeneHs.591288 [ NCBI ]
CGAP (NCI)Hs.591288
Alternative Splicing GalleryENSG00000163608
Gene ExpressionNEPRO [ NCBI-GEO ]   NEPRO [ EBI - ARRAY_EXPRESS ]   NEPRO [ SEEK ]   NEPRO [ MEM ]
Gene Expression Viewer (FireBrowse)NEPRO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25871
GTEX Portal (Tissue expression)NEPRO
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NW34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NW34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NW34
Splice isoforms : SwissVarQ6NW34
PhosPhoSitePlusQ6NW34
Domains : Interpro (EBI)DUF4477   
Domain families : Pfam (Sanger)DUF4477 (PF14780)   
Domain families : Pfam (NCBI)pfam14780   
Conserved Domain (NCBI)NEPRO
DMDM Disease mutations25871
Blocks (Seattle)NEPRO
SuperfamilyQ6NW34
Human Protein AtlasENSG00000163608
Peptide AtlasQ6NW34
HPRD08524
IPIIPI00295519   IPI00470909   IPI00744149   IPI00876914   IPI00908539   IPI00945053   IPI00946219   IPI00945576   IPI00947255   IPI00945199   IPI00947395   
Protein Interaction databases
DIP (DOE-UCLA)Q6NW34
IntAct (EBI)Q6NW34
FunCoupENSG00000163608
BioGRIDNEPRO
STRING (EMBL)NEPRO
ZODIACNEPRO
Ontologies - Pathways
QuickGOQ6NW34
Ontology : AmiGOnucleus  nucleolus  negative regulation of neuron differentiation  positive regulation of Notch signaling pathway  
Ontology : EGO-EBInucleus  nucleolus  negative regulation of neuron differentiation  positive regulation of Notch signaling pathway  
NDEx NetworkNEPRO
Atlas of Cancer Signalling NetworkNEPRO
Wikipedia pathwaysNEPRO
Orthology - Evolution
OrthoDB25871
GeneTree (enSembl)ENSG00000163608
Phylogenetic Trees/Animal Genes : TreeFamNEPRO
HOVERGENQ6NW34
HOGENOMQ6NW34
Homologs : HomoloGeneNEPRO
Homology/Alignments : Family Browser (UCSC)NEPRO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNEPRO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NEPRO
dbVarNEPRO
ClinVarNEPRO
1000_GenomesNEPRO 
Exome Variant ServerNEPRO
ExAC (Exome Aggregation Consortium)NEPRO (select the gene name)
Genetic variants : HAPMAP25871
Genomic Variants (DGV)NEPRO [DGVbeta]
DECIPHER (Syndromes)3:112721292-112738580  ENSG00000163608
CONAN: Copy Number AnalysisNEPRO 
Mutations
ICGC Data PortalNEPRO 
TCGA Data PortalNEPRO 
Broad Tumor PortalNEPRO
OASIS PortalNEPRO [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNEPRO
BioMutasearch NEPRO
DgiDB (Drug Gene Interaction Database)NEPRO
DoCM (Curated mutations)NEPRO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NEPRO (select a term)
intoGenNEPRO
Cancer3DNEPRO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617089   
Orphanet
MedgenNEPRO
Genetic Testing Registry NEPRO
NextProtQ6NW34 [Medical]
TSGene25871
GENETestsNEPRO
Huge Navigator NEPRO [HugePedia]
snp3D : Map Gene to Disease25871
BioCentury BCIQNEPRO
ClinGenNEPRO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25871
Chemical/Pharm GKB GenePA134948355
Clinical trialNEPRO
Miscellaneous
canSAR (ICR)NEPRO (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNEPRO
EVEXNEPRO
GoPubMedNEPRO
iHOPNEPRO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:34:49 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.