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NES (nestin)

Identity

Alias_symbol (synonym)FLJ21841
Other aliasNbla00170
HGNC (Hugo) NES
LocusID (NCBI) 10763
Atlas_Id 46134
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 156638556 and ends at 156647189 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NES (1q23.1) / NOS3 (7q36.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NES   7756
Cards
Entrez_Gene (NCBI)NES  10763  nestin
AliasesNbla00170
GeneCards (Weizmann)NES
Ensembl hg19 (Hinxton)ENSG00000132688 [Gene_View]  chr1:156638556-156647189 [Contig_View]  NES [Vega]
Ensembl hg38 (Hinxton)ENSG00000132688 [Gene_View]  chr1:156638556-156647189 [Contig_View]  NES [Vega]
ICGC DataPortalENSG00000132688
TCGA cBioPortalNES
AceView (NCBI)NES
Genatlas (Paris)NES
WikiGenes10763
SOURCE (Princeton)NES
Genetics Home Reference (NIH)NES
Genomic and cartography
GoldenPath hg19 (UCSC)NES  -     chr1:156638556-156647189 -  1q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NES  -     1q23.1   [Description]    (hg38-Dec_2013)
EnsemblNES - 1q23.1 [CytoView hg19]  NES - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBINES [Mapview hg19]  NES [Mapview hg38]
OMIM600915   
Gene and transcription
Genbank (Entrez)AB073350 AF086454 AK025494 AL120767 BC032580
RefSeq transcript (Entrez)NM_006617
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_012300 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)NES
Cluster EST : UnigeneHs.527971 [ NCBI ]
CGAP (NCI)Hs.527971
Alternative Splicing GalleryENSG00000132688
Gene ExpressionNES [ NCBI-GEO ]   NES [ EBI - ARRAY_EXPRESS ]   NES [ SEEK ]   NES [ MEM ]
Gene Expression Viewer (FireBrowse)NES [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10763
GTEX Portal (Tissue expression)NES
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48681   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48681  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48681
Splice isoforms : SwissVarP48681
PhosPhoSitePlusP48681
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Nestin   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Conserved Domain (NCBI)NES
DMDM Disease mutations10763
Blocks (Seattle)NES
SuperfamilyP48681
Human Protein AtlasENSG00000132688
Peptide AtlasP48681
HPRD09020
IPIIPI00010800   IPI00478531   IPI00844287   
Protein Interaction databases
DIP (DOE-UCLA)P48681
IntAct (EBI)P48681
FunCoupENSG00000132688
BioGRIDNES
STRING (EMBL)NES
ZODIACNES
Ontologies - Pathways
QuickGOP48681
Ontology : AmiGOG2/M transition of mitotic cell cycle  molecular_function  structural molecule activity  cytoplasm  intermediate filament  central nervous system development  brain development  intermediate filament binding  positive regulation of intermediate filament depolymerization  embryonic camera-type eye development  negative regulation of protein binding  negative regulation of catalytic activity  negative regulation of neuron apoptotic process  intermediate filament cytoskeleton  cell projection morphogenesis  stem cell proliferation  positive regulation of neural precursor cell proliferation  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  molecular_function  structural molecule activity  cytoplasm  intermediate filament  central nervous system development  brain development  intermediate filament binding  positive regulation of intermediate filament depolymerization  embryonic camera-type eye development  negative regulation of protein binding  negative regulation of catalytic activity  negative regulation of neuron apoptotic process  intermediate filament cytoskeleton  cell projection morphogenesis  stem cell proliferation  positive regulation of neural precursor cell proliferation  
NDEx NetworkNES
Atlas of Cancer Signalling NetworkNES
Wikipedia pathwaysNES
Orthology - Evolution
OrthoDB10763
GeneTree (enSembl)ENSG00000132688
Phylogenetic Trees/Animal Genes : TreeFamNES
HOVERGENP48681
HOGENOMP48681
Homologs : HomoloGeneNES
Homology/Alignments : Family Browser (UCSC)NES
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNES [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NES
dbVarNES
ClinVarNES
1000_GenomesNES 
Exome Variant ServerNES
ExAC (Exome Aggregation Consortium)NES (select the gene name)
Genetic variants : HAPMAP10763
Genomic Variants (DGV)NES [DGVbeta]
DECIPHER (Syndromes)1:156638556-156647189  ENSG00000132688
CONAN: Copy Number AnalysisNES 
Mutations
ICGC Data PortalNES 
TCGA Data PortalNES 
Broad Tumor PortalNES
OASIS PortalNES [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNES  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNES
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NES
DgiDB (Drug Gene Interaction Database)NES
DoCM (Curated mutations)NES (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NES (select a term)
intoGenNES
Cancer3DNES(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600915   
Orphanet
MedgenNES
Genetic Testing Registry NES
NextProtP48681 [Medical]
TSGene10763
GENETestsNES
Huge Navigator NES [HugePedia]
snp3D : Map Gene to Disease10763
BioCentury BCIQNES
ClinGenNES
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10763
Chemical/Pharm GKB GenePA31556
Clinical trialNES
Miscellaneous
canSAR (ICR)NES (select the gene name)
Probes
Litterature
PubMed197 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNES
EVEXNES
GoPubMedNES
iHOPNES
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:06 CEST 2017

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