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NETO1 (neuropilin and tolloid like 1)

Identity

Alias_namesneuropilin (NRP) and tolloid (TLL)-like 1
Alias_symbol (synonym)BTCL1
BCTL1
Other alias
HGNC (Hugo) NETO1
LocusID (NCBI) 81832
Atlas_Id 70800
Location 18q22.3  [Link to chromosome band 18q22]
Location_base_pair Starts at 72742314 and ends at 72867575 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NETO1   13823
Cards
Entrez_Gene (NCBI)NETO1  81832  neuropilin and tolloid like 1
AliasesBCTL1; BTCL1
GeneCards (Weizmann)NETO1
Ensembl hg19 (Hinxton)ENSG00000166342 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166342 [Gene_View]  chr18:72742314-72867575 [Contig_View]  NETO1 [Vega]
ICGC DataPortalENSG00000166342
TCGA cBioPortalNETO1
AceView (NCBI)NETO1
Genatlas (Paris)NETO1
WikiGenes81832
SOURCE (Princeton)NETO1
Genetics Home Reference (NIH)NETO1
Genomic and cartography
GoldenPath hg38 (UCSC)NETO1  -     chr18:72742314-72867575 -  18q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NETO1  -     18q22.3   [Description]    (hg19-Feb_2009)
EnsemblNETO1 - 18q22.3 [CytoView hg19]  NETO1 - 18q22.3 [CytoView hg38]
Mapping of homologs : NCBINETO1 [Mapview hg19]  NETO1 [Mapview hg38]
OMIM607973   
Gene and transcription
Genbank (Entrez)AF448838 AF448839 AK123319 AL834354 BC050329
RefSeq transcript (Entrez)NM_001201465 NM_138966 NM_138999 NM_153181
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NETO1
Cluster EST : UnigeneHs.465407 [ NCBI ]
CGAP (NCI)Hs.465407
Alternative Splicing GalleryENSG00000166342
Gene ExpressionNETO1 [ NCBI-GEO ]   NETO1 [ EBI - ARRAY_EXPRESS ]   NETO1 [ SEEK ]   NETO1 [ MEM ]
Gene Expression Viewer (FireBrowse)NETO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81832
GTEX Portal (Tissue expression)NETO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDF5
Splice isoforms : SwissVarQ8TDF5
PhosPhoSitePlusQ8TDF5
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    LDLRA_1 (PS01209)    LDLRA_2 (PS50068)   
Domains : Interpro (EBI)CUB_dom    LDLR_class-A_CS    LDrepeatLR_classA_rpt    NETO1   
Domain families : Pfam (Sanger)CUB (PF00431)    Ldl_recept_a (PF00057)   
Domain families : Pfam (NCBI)pfam00431    pfam00057   
Domain families : Smart (EMBL)CUB (SM00042)  LDLa (SM00192)  
Conserved Domain (NCBI)NETO1
DMDM Disease mutations81832
Blocks (Seattle)NETO1
SuperfamilyQ8TDF5
Human Protein AtlasENSG00000166342
Peptide AtlasQ8TDF5
HPRD16264
IPIIPI00171400   IPI00171294   IPI00152524   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDF5
IntAct (EBI)Q8TDF5
FunCoupENSG00000166342
BioGRIDNETO1
STRING (EMBL)NETO1
ZODIACNETO1
Ontologies - Pathways
QuickGOQ8TDF5
Ontology : AmiGOextracellular region  memory  visual learning  postsynaptic density  integral component of membrane  cell junction  ionotropic glutamate receptor binding  regulation of long-term neuronal synaptic plasticity  excitatory synapse  receptor localization to synapse  postsynaptic density membrane  regulation of kainate selective glutamate receptor activity  positive regulation of excitatory postsynaptic potential  
Ontology : EGO-EBIextracellular region  memory  visual learning  postsynaptic density  integral component of membrane  cell junction  ionotropic glutamate receptor binding  regulation of long-term neuronal synaptic plasticity  excitatory synapse  receptor localization to synapse  postsynaptic density membrane  regulation of kainate selective glutamate receptor activity  positive regulation of excitatory postsynaptic potential  
NDEx NetworkNETO1
Atlas of Cancer Signalling NetworkNETO1
Wikipedia pathwaysNETO1
Orthology - Evolution
OrthoDB81832
GeneTree (enSembl)ENSG00000166342
Phylogenetic Trees/Animal Genes : TreeFamNETO1
HOVERGENQ8TDF5
HOGENOMQ8TDF5
Homologs : HomoloGeneNETO1
Homology/Alignments : Family Browser (UCSC)NETO1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNETO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NETO1
dbVarNETO1
ClinVarNETO1
1000_GenomesNETO1 
Exome Variant ServerNETO1
ExAC (Exome Aggregation Consortium)NETO1 (select the gene name)
Genetic variants : HAPMAP81832
Genomic Variants (DGV)NETO1 [DGVbeta]
DECIPHERNETO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNETO1 
Mutations
ICGC Data PortalNETO1 
TCGA Data PortalNETO1 
Broad Tumor PortalNETO1
OASIS PortalNETO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNETO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNETO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NETO1
DgiDB (Drug Gene Interaction Database)NETO1
DoCM (Curated mutations)NETO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NETO1 (select a term)
intoGenNETO1
Cancer3DNETO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607973   
Orphanet
MedgenNETO1
Genetic Testing Registry NETO1
NextProtQ8TDF5 [Medical]
TSGene81832
GENETestsNETO1
Huge Navigator NETO1 [HugePedia]
snp3D : Map Gene to Disease81832
BioCentury BCIQNETO1
ClinGenNETO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81832
Chemical/Pharm GKB GenePA31558
Clinical trialNETO1
Miscellaneous
canSAR (ICR)NETO1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNETO1
EVEXNETO1
GoPubMedNETO1
iHOPNETO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:44:53 CEST 2017

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