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NETO2 (neuropilin and tolloid like 2)

Identity

Alias_namesneuropilin (NRP) and tolloid (TLL)-like 2
Alias_symbol (synonym)FLJ10430
NEOT2
Other aliasBTCL2
HGNC (Hugo) NETO2
LocusID (NCBI) 81831
Atlas_Id 55913
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 47115431 and ends at 47177936 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DNAJA2 (16q11.2) / NETO2 (16q12.1)HSPA12B (20p13) / NETO2 (16q12.1)MAP4K2 (11q13.1) / NETO2 (16q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NETO2   14644
Cards
Entrez_Gene (NCBI)NETO2  81831  neuropilin and tolloid like 2
AliasesBTCL2; NEOT2
GeneCards (Weizmann)NETO2
Ensembl hg19 (Hinxton)ENSG00000171208 [Gene_View]  chr16:47115431-47177936 [Contig_View]  NETO2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171208 [Gene_View]  chr16:47115431-47177936 [Contig_View]  NETO2 [Vega]
ICGC DataPortalENSG00000171208
TCGA cBioPortalNETO2
AceView (NCBI)NETO2
Genatlas (Paris)NETO2
WikiGenes81831
SOURCE (Princeton)NETO2
Genetics Home Reference (NIH)NETO2
Genomic and cartography
GoldenPath hg19 (UCSC)NETO2  -     chr16:47115431-47177936 -  16q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NETO2  -     16q12.1   [Description]    (hg38-Dec_2013)
EnsemblNETO2 - 16q12.1 [CytoView hg19]  NETO2 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBINETO2 [Mapview hg19]  NETO2 [Mapview hg38]
OMIM607974   
Gene and transcription
Genbank (Entrez)AK001292 AK027478 AK027630 AK074937 AK297408
RefSeq transcript (Entrez)NM_001201477 NM_018092
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NETO2
Cluster EST : UnigeneHs.645802 [ NCBI ]
CGAP (NCI)Hs.645802
Alternative Splicing GalleryENSG00000171208
Gene ExpressionNETO2 [ NCBI-GEO ]   NETO2 [ EBI - ARRAY_EXPRESS ]   NETO2 [ SEEK ]   NETO2 [ MEM ]
Gene Expression Viewer (FireBrowse)NETO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81831
GTEX Portal (Tissue expression)NETO2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NC67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NC67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NC67
Splice isoforms : SwissVarQ8NC67
PhosPhoSitePlusQ8NC67
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    LDLRA_1 (PS01209)    LDLRA_2 (PS50068)   
Domains : Interpro (EBI)CUB_dom    LDLR_class-A_CS    LDrepeatLR_classA_rpt    NETO2   
Domain families : Pfam (Sanger)CUB (PF00431)    Ldl_recept_a (PF00057)   
Domain families : Pfam (NCBI)pfam00431    pfam00057   
Domain families : Smart (EMBL)CUB (SM00042)  LDLa (SM00192)  
Conserved Domain (NCBI)NETO2
DMDM Disease mutations81831
Blocks (Seattle)NETO2
SuperfamilyQ8NC67
Human Protein AtlasENSG00000171208
Peptide AtlasQ8NC67
HPRD09721
IPIIPI00168341   IPI00550214   
Protein Interaction databases
DIP (DOE-UCLA)Q8NC67
IntAct (EBI)Q8NC67
FunCoupENSG00000171208
BioGRIDNETO2
STRING (EMBL)NETO2
ZODIACNETO2
Ontologies - Pathways
QuickGOQ8NC67
Ontology : AmiGOpostsynaptic density  integral component of membrane  ionotropic glutamate receptor binding  regulation of kainate selective glutamate receptor activity  
Ontology : EGO-EBIpostsynaptic density  integral component of membrane  ionotropic glutamate receptor binding  regulation of kainate selective glutamate receptor activity  
NDEx NetworkNETO2
Atlas of Cancer Signalling NetworkNETO2
Wikipedia pathwaysNETO2
Orthology - Evolution
OrthoDB81831
GeneTree (enSembl)ENSG00000171208
Phylogenetic Trees/Animal Genes : TreeFamNETO2
HOVERGENQ8NC67
HOGENOMQ8NC67
Homologs : HomoloGeneNETO2
Homology/Alignments : Family Browser (UCSC)NETO2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNETO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NETO2
dbVarNETO2
ClinVarNETO2
1000_GenomesNETO2 
Exome Variant ServerNETO2
ExAC (Exome Aggregation Consortium)NETO2 (select the gene name)
Genetic variants : HAPMAP81831
Genomic Variants (DGV)NETO2 [DGVbeta]
DECIPHER (Syndromes)16:47115431-47177936  ENSG00000171208
CONAN: Copy Number AnalysisNETO2 
Mutations
ICGC Data PortalNETO2 
TCGA Data PortalNETO2 
Broad Tumor PortalNETO2
OASIS PortalNETO2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNETO2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNETO2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NETO2
DgiDB (Drug Gene Interaction Database)NETO2
DoCM (Curated mutations)NETO2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NETO2 (select a term)
intoGenNETO2
Cancer3DNETO2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607974   
Orphanet
MedgenNETO2
Genetic Testing Registry NETO2
NextProtQ8NC67 [Medical]
TSGene81831
GENETestsNETO2
Huge Navigator NETO2 [HugePedia]
snp3D : Map Gene to Disease81831
BioCentury BCIQNETO2
ClinGenNETO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81831
Chemical/Pharm GKB GenePA31559
Clinical trialNETO2
Miscellaneous
canSAR (ICR)NETO2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNETO2
EVEXNETO2
GoPubMedNETO2
iHOPNETO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:07 CEST 2017

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