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NEURL1B (neuralized E3 ubiquitin protein ligase 1B)

Identity

Alias_namesneuralized homolog 1B (Drosophila)
Alias_symbol (synonym)DKFZP761M1511
Neur2
Other aliasNEURL3
hNeur2
neur2
HGNC (Hugo) NEURL1B
LocusID (NCBI) 54492
Atlas_Id 70803
Location 5q35.1  [Link to chromosome band 5q35]
Location_base_pair Starts at 172641266 and ends at 172691530 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NEURL1B (5q35.1) / MYD88 (3p22.2)NEURL1B (5q35.1) / RPL6 (12q24.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NEURL1B   35422
Cards
Entrez_Gene (NCBI)NEURL1B  54492  neuralized E3 ubiquitin protein ligase 1B
AliasesNEURL3; hNeur2; neur2
GeneCards (Weizmann)NEURL1B
Ensembl hg19 (Hinxton)ENSG00000214357 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214357 [Gene_View]  chr5:172641266-172691530 [Contig_View]  NEURL1B [Vega]
ICGC DataPortalENSG00000214357
TCGA cBioPortalNEURL1B
AceView (NCBI)NEURL1B
Genatlas (Paris)NEURL1B
WikiGenes54492
SOURCE (Princeton)NEURL1B
Genetics Home Reference (NIH)NEURL1B
Genomic and cartography
GoldenPath hg38 (UCSC)NEURL1B  -     chr5:172641266-172691530 +  5q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NEURL1B  -     5q35.1   [Description]    (hg19-Feb_2009)
EnsemblNEURL1B - 5q35.1 [CytoView hg19]  NEURL1B - 5q35.1 [CytoView hg38]
Mapping of homologs : NCBINEURL1B [Mapview hg19]  NEURL1B [Mapview hg38]
OMIM615893   
Gene and transcription
Genbank (Entrez)AK026748 AK091605 AK096661 AK126311 CN267889
RefSeq transcript (Entrez)NM_001142651 NM_001308177 NM_001308178
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NEURL1B
Cluster EST : UnigeneHs.91521 [ NCBI ]
CGAP (NCI)Hs.91521
Alternative Splicing GalleryENSG00000214357
Gene ExpressionNEURL1B [ NCBI-GEO ]   NEURL1B [ EBI - ARRAY_EXPRESS ]   NEURL1B [ SEEK ]   NEURL1B [ MEM ]
Gene Expression Viewer (FireBrowse)NEURL1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54492
GTEX Portal (Tissue expression)NEURL1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MQ27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MQ27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MQ27
Splice isoforms : SwissVarA8MQ27
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusA8MQ27
Domaine pattern : Prosite (Expaxy)NHR (PS51065)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)NHR_dom    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Neuralized (PF07177)   
Domain families : Pfam (NCBI)pfam07177   
Domain families : Smart (EMBL)NEUZ (SM00588)  
Conserved Domain (NCBI)NEURL1B
DMDM Disease mutations54492
Blocks (Seattle)NEURL1B
SuperfamilyA8MQ27
Human Protein AtlasENSG00000214357
Peptide AtlasA8MQ27
IPIIPI00871148   IPI00929282   IPI00952681   IPI00985052   
Protein Interaction databases
DIP (DOE-UCLA)A8MQ27
IntAct (EBI)A8MQ27
FunCoupENSG00000214357
BioGRIDNEURL1B
STRING (EMBL)NEURL1B
ZODIACNEURL1B
Ontologies - Pathways
QuickGOA8MQ27
Ontology : AmiGOprotein binding  early endosome  Notch signaling pathway  zinc ion binding  protein ubiquitination  transferase activity  ligase activity  ubiquitin-dependent endocytosis  
Ontology : EGO-EBIprotein binding  early endosome  Notch signaling pathway  zinc ion binding  protein ubiquitination  transferase activity  ligase activity  ubiquitin-dependent endocytosis  
NDEx NetworkNEURL1B
Atlas of Cancer Signalling NetworkNEURL1B
Wikipedia pathwaysNEURL1B
Orthology - Evolution
OrthoDB54492
GeneTree (enSembl)ENSG00000214357
Phylogenetic Trees/Animal Genes : TreeFamNEURL1B
HOVERGENA8MQ27
HOGENOMA8MQ27
Homologs : HomoloGeneNEURL1B
Homology/Alignments : Family Browser (UCSC)NEURL1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNEURL1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NEURL1B
dbVarNEURL1B
ClinVarNEURL1B
1000_GenomesNEURL1B 
Exome Variant ServerNEURL1B
ExAC (Exome Aggregation Consortium)NEURL1B (select the gene name)
Genetic variants : HAPMAP54492
Genomic Variants (DGV)NEURL1B [DGVbeta]
DECIPHERNEURL1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNEURL1B 
Mutations
ICGC Data PortalNEURL1B 
TCGA Data PortalNEURL1B 
Broad Tumor PortalNEURL1B
OASIS PortalNEURL1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNEURL1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNEURL1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NEURL1B
DgiDB (Drug Gene Interaction Database)NEURL1B
DoCM (Curated mutations)NEURL1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NEURL1B (select a term)
intoGenNEURL1B
Cancer3DNEURL1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615893   
Orphanet
MedgenNEURL1B
Genetic Testing Registry NEURL1B
NextProtA8MQ27 [Medical]
TSGene54492
GENETestsNEURL1B
Target ValidationNEURL1B
Huge Navigator NEURL1B [HugePedia]
snp3D : Map Gene to Disease54492
BioCentury BCIQNEURL1B
ClinGenNEURL1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54492
Chemical/Pharm GKB GenePA164723819
Clinical trialNEURL1B
Miscellaneous
canSAR (ICR)NEURL1B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNEURL1B
EVEXNEURL1B
GoPubMedNEURL1B
iHOPNEURL1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:57 CEST 2017

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