Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NEURL3 (neuralized E3 ubiquitin protein ligase 3)

Identity

Alias_namesneuralized homolog 3 (Drosophila) pseudogene
Alias_symbol (synonym)Lincr
LOC93082
Other aliasLINCR
HGNC (Hugo) NEURL3
LocusID (NCBI) 93082
Atlas_Id 70804
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 97163380 and ends at 97171122 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NEURL3   25162
Cards
Entrez_Gene (NCBI)NEURL3  93082  neuralized E3 ubiquitin protein ligase 3
AliasesLINCR
GeneCards (Weizmann)NEURL3
Ensembl hg19 (Hinxton)ENSG00000163121 [Gene_View]  chr2:97163380-97171122 [Contig_View]  NEURL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163121 [Gene_View]  chr2:97163380-97171122 [Contig_View]  NEURL3 [Vega]
ICGC DataPortalENSG00000163121
TCGA cBioPortalNEURL3
AceView (NCBI)NEURL3
Genatlas (Paris)NEURL3
WikiGenes93082
SOURCE (Princeton)NEURL3
Genetics Home Reference (NIH)NEURL3
Genomic and cartography
GoldenPath hg19 (UCSC)NEURL3  -     chr2:97163380-97171122 -  2q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NEURL3  -     2q11.2   [Description]    (hg38-Dec_2013)
EnsemblNEURL3 - 2q11.2 [CytoView hg19]  NEURL3 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBINEURL3 [Mapview hg19]  NEURL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK303423 AK311953 AL389981 BC012317 CA311039
RefSeq transcript (Entrez)NM_001080535 NM_001285485 NM_001285486
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929303
Consensus coding sequences : CCDS (NCBI)NEURL3
Cluster EST : UnigeneHs.149219 [ NCBI ]
CGAP (NCI)Hs.149219
Alternative Splicing GalleryENSG00000163121
Gene ExpressionNEURL3 [ NCBI-GEO ]   NEURL3 [ EBI - ARRAY_EXPRESS ]   NEURL3 [ SEEK ]   NEURL3 [ MEM ]
Gene Expression Viewer (FireBrowse)NEURL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93082
GTEX Portal (Tissue expression)NEURL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EH8
Splice isoforms : SwissVarQ96EH8
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.-6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
PhosPhoSitePlusQ96EH8
Domaine pattern : Prosite (Expaxy)NHR (PS51065)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)NeuZ_dom    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Neuralized (PF07177)   
Domain families : Pfam (NCBI)pfam07177   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)NEURL3
DMDM Disease mutations93082
Blocks (Seattle)NEURL3
SuperfamilyQ96EH8
Human Protein AtlasENSG00000163121
Peptide AtlasQ96EH8
HPRD14296
IPIIPI00061495   
Protein Interaction databases
DIP (DOE-UCLA)Q96EH8
IntAct (EBI)Q96EH8
FunCoupENSG00000163121
BioGRIDNEURL3
STRING (EMBL)NEURL3
ZODIACNEURL3
Ontologies - Pathways
QuickGOQ96EH8
Ontology : AmiGOubiquitin-protein transferase activity  zinc ion binding  protein ubiquitination  ligase activity  
Ontology : EGO-EBIubiquitin-protein transferase activity  zinc ion binding  protein ubiquitination  ligase activity  
NDEx NetworkNEURL3
Atlas of Cancer Signalling NetworkNEURL3
Wikipedia pathwaysNEURL3
Orthology - Evolution
OrthoDB93082
GeneTree (enSembl)ENSG00000163121
Phylogenetic Trees/Animal Genes : TreeFamNEURL3
HOVERGENQ96EH8
HOGENOMQ96EH8
Homologs : HomoloGeneNEURL3
Homology/Alignments : Family Browser (UCSC)NEURL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNEURL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NEURL3
dbVarNEURL3
ClinVarNEURL3
1000_GenomesNEURL3 
Exome Variant ServerNEURL3
ExAC (Exome Aggregation Consortium)NEURL3 (select the gene name)
Genetic variants : HAPMAP93082
Genomic Variants (DGV)NEURL3 [DGVbeta]
DECIPHER (Syndromes)2:97163380-97171122  ENSG00000163121
CONAN: Copy Number AnalysisNEURL3 
Mutations
ICGC Data PortalNEURL3 
TCGA Data PortalNEURL3 
Broad Tumor PortalNEURL3
OASIS PortalNEURL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNEURL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNEURL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NEURL3
DgiDB (Drug Gene Interaction Database)NEURL3
DoCM (Curated mutations)NEURL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NEURL3 (select a term)
intoGenNEURL3
Cancer3DNEURL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNEURL3
Genetic Testing Registry NEURL3
NextProtQ96EH8 [Medical]
TSGene93082
GENETestsNEURL3
Huge Navigator NEURL3 [HugePedia]
snp3D : Map Gene to Disease93082
BioCentury BCIQNEURL3
ClinGenNEURL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93082
Clinical trialNEURL3
Miscellaneous
canSAR (ICR)NEURL3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNEURL3
EVEXNEURL3
GoPubMedNEURL3
iHOPNEURL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:34:50 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.