Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NEUROD4 (neuronal differentiation 4)

Identity

Alias_namesneurogenic differentiation 4
Alias_symbol (synonym)Atoh3
ATH-3
MATH-3
bHLHa4
Other aliasATH3
MATH3
HGNC (Hugo) NEUROD4
LocusID (NCBI) 58158
Atlas_Id 56234
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 55019945 and ends at 55030017 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NEUROD4   13802
Cards
Entrez_Gene (NCBI)NEUROD4  58158  neuronal differentiation 4
AliasesATH-3; ATH3; Atoh3; MATH-3; 
MATH3; bHLHa4
GeneCards (Weizmann)NEUROD4
Ensembl hg19 (Hinxton)ENSG00000123307 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123307 [Gene_View]  chr12:55019945-55030017 [Contig_View]  NEUROD4 [Vega]
ICGC DataPortalENSG00000123307
TCGA cBioPortalNEUROD4
AceView (NCBI)NEUROD4
Genatlas (Paris)NEUROD4
WikiGenes58158
SOURCE (Princeton)NEUROD4
Genetics Home Reference (NIH)NEUROD4
Genomic and cartography
GoldenPath hg38 (UCSC)NEUROD4  -     chr12:55019945-55030017 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NEUROD4  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblNEUROD4 - 12q13.2 [CytoView hg19]  NEUROD4 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBINEUROD4 [Mapview hg19]  NEUROD4 [Mapview hg38]
OMIM611635   
Gene and transcription
Genbank (Entrez)AK314136 BC040961 BM683125 DA417566 DA768001
RefSeq transcript (Entrez)NM_021191
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NEUROD4
Cluster EST : UnigeneHs.591024 [ NCBI ]
CGAP (NCI)Hs.591024
Alternative Splicing GalleryENSG00000123307
Gene ExpressionNEUROD4 [ NCBI-GEO ]   NEUROD4 [ EBI - ARRAY_EXPRESS ]   NEUROD4 [ SEEK ]   NEUROD4 [ MEM ]
Gene Expression Viewer (FireBrowse)NEUROD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58158
GTEX Portal (Tissue expression)NEUROD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD90   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HD90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HD90
Splice isoforms : SwissVarQ9HD90
PhosPhoSitePlusQ9HD90
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom    Neurod4    Neurogenic_DUF    TF_bHLH_NeuroD   
Domain families : Pfam (Sanger)HLH (PF00010)    Neuro_bHLH (PF12533)   
Domain families : Pfam (NCBI)pfam00010    pfam12533   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)NEUROD4
DMDM Disease mutations58158
Blocks (Seattle)NEUROD4
SuperfamilyQ9HD90
Human Protein AtlasENSG00000123307
Peptide AtlasQ9HD90
HPRD14826
IPIIPI00009621   
Protein Interaction databases
DIP (DOE-UCLA)Q9HD90
IntAct (EBI)Q9HD90
FunCoupENSG00000123307
BioGRIDNEUROD4
STRING (EMBL)NEUROD4
ZODIACNEUROD4
Ontologies - Pathways
QuickGOQ9HD90
Ontology : AmiGOneuron migration  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  Notch signaling pathway  neuroblast proliferation  glial cell differentiation  amacrine cell differentiation  cell fate commitment  positive regulation of cell differentiation  protein dimerization activity  neuron development  
Ontology : EGO-EBIneuron migration  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  Notch signaling pathway  neuroblast proliferation  glial cell differentiation  amacrine cell differentiation  cell fate commitment  positive regulation of cell differentiation  protein dimerization activity  neuron development  
NDEx NetworkNEUROD4
Atlas of Cancer Signalling NetworkNEUROD4
Wikipedia pathwaysNEUROD4
Orthology - Evolution
OrthoDB58158
GeneTree (enSembl)ENSG00000123307
Phylogenetic Trees/Animal Genes : TreeFamNEUROD4
HOVERGENQ9HD90
HOGENOMQ9HD90
Homologs : HomoloGeneNEUROD4
Homology/Alignments : Family Browser (UCSC)NEUROD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNEUROD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NEUROD4
dbVarNEUROD4
ClinVarNEUROD4
1000_GenomesNEUROD4 
Exome Variant ServerNEUROD4
ExAC (Exome Aggregation Consortium)NEUROD4 (select the gene name)
Genetic variants : HAPMAP58158
Genomic Variants (DGV)NEUROD4 [DGVbeta]
DECIPHERNEUROD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNEUROD4 
Mutations
ICGC Data PortalNEUROD4 
TCGA Data PortalNEUROD4 
Broad Tumor PortalNEUROD4
OASIS PortalNEUROD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNEUROD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNEUROD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NEUROD4
DgiDB (Drug Gene Interaction Database)NEUROD4
DoCM (Curated mutations)NEUROD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NEUROD4 (select a term)
intoGenNEUROD4
Cancer3DNEUROD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611635   
Orphanet
MedgenNEUROD4
Genetic Testing Registry NEUROD4
NextProtQ9HD90 [Medical]
TSGene58158
GENETestsNEUROD4
Target ValidationNEUROD4
Huge Navigator NEUROD4 [HugePedia]
snp3D : Map Gene to Disease58158
BioCentury BCIQNEUROD4
ClinGenNEUROD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58158
Chemical/Pharm GKB GenePA31566
Clinical trialNEUROD4
Miscellaneous
canSAR (ICR)NEUROD4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNEUROD4
EVEXNEUROD4
GoPubMedNEUROD4
iHOPNEUROD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:01:31 CEST 2017

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