Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NEUROD6 (neuronal differentiation 6)

Identity

Alias_namesneurogenic differentiation 6
Alias_symbol (synonym)Atoh2
NEX1M
Math-2
bHLHa2
Nex1
Other aliasMATH2
HGNC (Hugo) NEUROD6
LocusID (NCBI) 63974
Atlas_Id 70807
Location 7p14.3  [Link to chromosome band 7p14]
Location_base_pair Starts at 31337461 and ends at 31340924 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NEUROD6 (7p14.3) / CAPN1 (11q13.1)NEUROD6 (7p14.3) / PRKACB (1p31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NEUROD6   13804
Cards
Entrez_Gene (NCBI)NEUROD6  63974  neuronal differentiation 6
AliasesAtoh2; MATH2; Math-2; NEX1M; 
Nex1; bHLHa2
GeneCards (Weizmann)NEUROD6
Ensembl hg19 (Hinxton)ENSG00000164600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164600 [Gene_View]  chr7:31337461-31340924 [Contig_View]  NEUROD6 [Vega]
ICGC DataPortalENSG00000164600
TCGA cBioPortalNEUROD6
AceView (NCBI)NEUROD6
Genatlas (Paris)NEUROD6
WikiGenes63974
SOURCE (Princeton)NEUROD6
Genetics Home Reference (NIH)NEUROD6
Genomic and cartography
GoldenPath hg38 (UCSC)NEUROD6  -     chr7:31337461-31340924 -  7p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NEUROD6  -     7p14.3   [Description]    (hg19-Feb_2009)
EnsemblNEUROD6 - 7p14.3 [CytoView hg19]  NEUROD6 - 7p14.3 [CytoView hg38]
Mapping of homologs : NCBINEUROD6 [Mapview hg19]  NEUROD6 [Mapview hg38]
OMIM611513   
Gene and transcription
Genbank (Entrez)AF063609 AF136169 AF248954 AK055224 AK055238
RefSeq transcript (Entrez)NM_022728
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NEUROD6
Cluster EST : UnigeneHs.45152 [ NCBI ]
CGAP (NCI)Hs.45152
Alternative Splicing GalleryENSG00000164600
Gene ExpressionNEUROD6 [ NCBI-GEO ]   NEUROD6 [ EBI - ARRAY_EXPRESS ]   NEUROD6 [ SEEK ]   NEUROD6 [ MEM ]
Gene Expression Viewer (FireBrowse)NEUROD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63974
GTEX Portal (Tissue expression)NEUROD6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NK8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NK8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NK8
Splice isoforms : SwissVarQ96NK8
PhosPhoSitePlusQ96NK8
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom    Neurod6    Neurogenic_DUF    TF_bHLH_NeuroD   
Domain families : Pfam (Sanger)HLH (PF00010)    Neuro_bHLH (PF12533)   
Domain families : Pfam (NCBI)pfam00010    pfam12533   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)NEUROD6
DMDM Disease mutations63974
Blocks (Seattle)NEUROD6
SuperfamilyQ96NK8
Human Protein AtlasENSG00000164600
Peptide AtlasQ96NK8
HPRD11387
IPIIPI00102358   IPI00909108   
Protein Interaction databases
DIP (DOE-UCLA)Q96NK8
IntAct (EBI)Q96NK8
FunCoupENSG00000164600
BioGRIDNEUROD6
STRING (EMBL)NEUROD6
ZODIACNEUROD6
Ontologies - Pathways
QuickGOQ96NK8
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  nucleus  transcription from RNA polymerase II promoter  dentate gyrus development  cell differentiation  positive regulation of transcription from RNA polymerase II promoter  protein dimerization activity  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  nucleus  transcription from RNA polymerase II promoter  dentate gyrus development  cell differentiation  positive regulation of transcription from RNA polymerase II promoter  protein dimerization activity  
NDEx NetworkNEUROD6
Atlas of Cancer Signalling NetworkNEUROD6
Wikipedia pathwaysNEUROD6
Orthology - Evolution
OrthoDB63974
GeneTree (enSembl)ENSG00000164600
Phylogenetic Trees/Animal Genes : TreeFamNEUROD6
HOVERGENQ96NK8
HOGENOMQ96NK8
Homologs : HomoloGeneNEUROD6
Homology/Alignments : Family Browser (UCSC)NEUROD6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNEUROD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NEUROD6
dbVarNEUROD6
ClinVarNEUROD6
1000_GenomesNEUROD6 
Exome Variant ServerNEUROD6
ExAC (Exome Aggregation Consortium)NEUROD6 (select the gene name)
Genetic variants : HAPMAP63974
Genomic Variants (DGV)NEUROD6 [DGVbeta]
DECIPHERNEUROD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNEUROD6 
Mutations
ICGC Data PortalNEUROD6 
TCGA Data PortalNEUROD6 
Broad Tumor PortalNEUROD6
OASIS PortalNEUROD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNEUROD6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNEUROD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NEUROD6
DgiDB (Drug Gene Interaction Database)NEUROD6
DoCM (Curated mutations)NEUROD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NEUROD6 (select a term)
intoGenNEUROD6
Cancer3DNEUROD6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611513   
Orphanet
MedgenNEUROD6
Genetic Testing Registry NEUROD6
NextProtQ96NK8 [Medical]
TSGene63974
GENETestsNEUROD6
Target ValidationNEUROD6
Huge Navigator NEUROD6 [HugePedia]
snp3D : Map Gene to Disease63974
BioCentury BCIQNEUROD6
ClinGenNEUROD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63974
Chemical/Pharm GKB GenePA31568
Clinical trialNEUROD6
Miscellaneous
canSAR (ICR)NEUROD6 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNEUROD6
EVEXNEUROD6
GoPubMedNEUROD6
iHOPNEUROD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:34 CEST 2017

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