Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NEUROG2 (neurogenin 2)

Identity

Alias_symbol (synonym)Atoh4
Math4A
ngn-2
bHLHa8
NGN2
Other alias
HGNC (Hugo) NEUROG2
LocusID (NCBI) 63973
Atlas_Id 70808
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 113434672 and ends at 113437328 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NEUROG2   13805
Cards
Entrez_Gene (NCBI)NEUROG2  63973  neurogenin 2
AliasesAtoh4; Math4A; NGN2; bHLHa8; 
ngn-2
GeneCards (Weizmann)NEUROG2
Ensembl hg19 (Hinxton)ENSG00000178403 [Gene_View]  chr4:113434672-113437328 [Contig_View]  NEUROG2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178403 [Gene_View]  chr4:113434672-113437328 [Contig_View]  NEUROG2 [Vega]
ICGC DataPortalENSG00000178403
TCGA cBioPortalNEUROG2
AceView (NCBI)NEUROG2
Genatlas (Paris)NEUROG2
WikiGenes63973
SOURCE (Princeton)NEUROG2
Genetics Home Reference (NIH)NEUROG2
Genomic and cartography
GoldenPath hg19 (UCSC)NEUROG2  -     chr4:113434672-113437328 -  4q25   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NEUROG2  -     4q25   [Description]    (hg38-Dec_2013)
EnsemblNEUROG2 - 4q25 [CytoView hg19]  NEUROG2 - 4q25 [CytoView hg38]
Mapping of homologs : NCBINEUROG2 [Mapview hg19]  NEUROG2 [Mapview hg38]
OMIM606624   
Gene and transcription
Genbank (Entrez)BC036847
RefSeq transcript (Entrez)NM_024019
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)NEUROG2
Cluster EST : UnigeneHs.744415 [ NCBI ]
CGAP (NCI)Hs.744415
Alternative Splicing GalleryENSG00000178403
Gene ExpressionNEUROG2 [ NCBI-GEO ]   NEUROG2 [ EBI - ARRAY_EXPRESS ]   NEUROG2 [ SEEK ]   NEUROG2 [ MEM ]
Gene Expression Viewer (FireBrowse)NEUROG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63973
GTEX Portal (Tissue expression)NEUROG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2A3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2A3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2A3
Splice isoforms : SwissVarQ9H2A3
PhosPhoSitePlusQ9H2A3
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)NEUROG2
DMDM Disease mutations63973
Blocks (Seattle)NEUROG2
SuperfamilyQ9H2A3
Human Protein AtlasENSG00000178403
Peptide AtlasQ9H2A3
HPRD06976
IPIIPI00218802   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2A3
IntAct (EBI)Q9H2A3
FunCoupENSG00000178403
BioGRIDNEUROG2
STRING (EMBL)NEUROG2
ZODIACNEUROG2
Ontologies - Pathways
QuickGOQ9H2A3
Ontology : AmiGOneuron migration  nucleus  transcription, DNA-templated  axon guidance  central nervous system neuron development  forebrain development  sequence-specific DNA binding  cell fate commitment  positive regulation of neuron differentiation  positive regulation of transcription from RNA polymerase II promoter  protein dimerization activity  cell maturation  positive regulation of sequence-specific DNA binding transcription factor activity  E-box binding  
Ontology : EGO-EBIneuron migration  nucleus  transcription, DNA-templated  axon guidance  central nervous system neuron development  forebrain development  sequence-specific DNA binding  cell fate commitment  positive regulation of neuron differentiation  positive regulation of transcription from RNA polymerase II promoter  protein dimerization activity  cell maturation  positive regulation of sequence-specific DNA binding transcription factor activity  E-box binding  
NDEx NetworkNEUROG2
Atlas of Cancer Signalling NetworkNEUROG2
Wikipedia pathwaysNEUROG2
Orthology - Evolution
OrthoDB63973
GeneTree (enSembl)ENSG00000178403
Phylogenetic Trees/Animal Genes : TreeFamNEUROG2
HOVERGENQ9H2A3
HOGENOMQ9H2A3
Homologs : HomoloGeneNEUROG2
Homology/Alignments : Family Browser (UCSC)NEUROG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNEUROG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NEUROG2
dbVarNEUROG2
ClinVarNEUROG2
1000_GenomesNEUROG2 
Exome Variant ServerNEUROG2
ExAC (Exome Aggregation Consortium)NEUROG2 (select the gene name)
Genetic variants : HAPMAP63973
Genomic Variants (DGV)NEUROG2 [DGVbeta]
DECIPHER (Syndromes)4:113434672-113437328  ENSG00000178403
CONAN: Copy Number AnalysisNEUROG2 
Mutations
ICGC Data PortalNEUROG2 
TCGA Data PortalNEUROG2 
Broad Tumor PortalNEUROG2
OASIS PortalNEUROG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNEUROG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNEUROG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NEUROG2
DgiDB (Drug Gene Interaction Database)NEUROG2
DoCM (Curated mutations)NEUROG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NEUROG2 (select a term)
intoGenNEUROG2
Cancer3DNEUROG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606624   
Orphanet
MedgenNEUROG2
Genetic Testing Registry NEUROG2
NextProtQ9H2A3 [Medical]
TSGene63973
GENETestsNEUROG2
Huge Navigator NEUROG2 [HugePedia]
snp3D : Map Gene to Disease63973
BioCentury BCIQNEUROG2
ClinGenNEUROG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63973
Chemical/Pharm GKB GenePA31570
Clinical trialNEUROG2
Miscellaneous
canSAR (ICR)NEUROG2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNEUROG2
EVEXNEUROG2
GoPubMedNEUROG2
iHOPNEUROG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:34:51 CET 2017

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