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NFAM1 (NFAT activating protein with ITAM motif 1)

Identity

Alias_symbol (synonym)CNAIP
Other alias
HGNC (Hugo) NFAM1
LocusID (NCBI) 150372
Atlas_Id 70811
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 42380408 and ends at 42432395 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NFAM1   29872
Cards
Entrez_Gene (NCBI)NFAM1  150372  NFAT activating protein with ITAM motif 1
AliasesCNAIP
GeneCards (Weizmann)NFAM1
Ensembl hg19 (Hinxton)ENSG00000235568 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235568 [Gene_View]  chr22:42380408-42432395 [Contig_View]  NFAM1 [Vega]
ICGC DataPortalENSG00000235568
TCGA cBioPortalNFAM1
AceView (NCBI)NFAM1
Genatlas (Paris)NFAM1
WikiGenes150372
SOURCE (Princeton)NFAM1
Genetics Home Reference (NIH)NFAM1
Genomic and cartography
GoldenPath hg38 (UCSC)NFAM1  -     chr22:42380408-42432395 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NFAM1  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblNFAM1 - 22q13.2 [CytoView hg19]  NFAM1 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBINFAM1 [Mapview hg19]  NFAM1 [Mapview hg38]
OMIM608740   
Gene and transcription
Genbank (Entrez)AK074094 AK097971 AY121370 AY247409 BC038241
RefSeq transcript (Entrez)NM_001318323 NM_145912
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NFAM1
Cluster EST : UnigeneHs.436677 [ NCBI ]
CGAP (NCI)Hs.436677
Alternative Splicing GalleryENSG00000235568
Gene ExpressionNFAM1 [ NCBI-GEO ]   NFAM1 [ EBI - ARRAY_EXPRESS ]   NFAM1 [ SEEK ]   NFAM1 [ MEM ]
Gene Expression Viewer (FireBrowse)NFAM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150372
GTEX Portal (Tissue expression)NFAM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NET5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NET5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NET5
Splice isoforms : SwissVarQ8NET5
PhosPhoSitePlusQ8NET5
Domaine pattern : Prosite (Expaxy)ITAM_1 (PS51055)   
Domains : Interpro (EBI)NFAM1    Phos_immunorcpt_sig_ITAM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NFAM1
DMDM Disease mutations150372
Blocks (Seattle)NFAM1
SuperfamilyQ8NET5
Human Protein AtlasENSG00000235568
Peptide AtlasQ8NET5
HPRD16380
IPIIPI00168743   IPI00878005   
Protein Interaction databases
DIP (DOE-UCLA)Q8NET5
IntAct (EBI)Q8NET5
FunCoupENSG00000235568
BioGRIDNFAM1
STRING (EMBL)NFAM1
ZODIACNFAM1
Ontologies - Pathways
QuickGOQ8NET5
Ontology : AmiGOpositive regulation of cytokine production  transmembrane signaling receptor activity  plasma membrane  inflammatory response  signal transduction  cell surface  integral component of membrane  B cell differentiation  intracellular signal transduction  azurophil granule membrane  neutrophil degranulation  membrane raft  regulation of B cell differentiation  B cell receptor signaling pathway  positive regulation of B cell receptor signaling pathway  positive regulation of sequence-specific DNA binding transcription factor activity  
Ontology : EGO-EBIpositive regulation of cytokine production  transmembrane signaling receptor activity  plasma membrane  inflammatory response  signal transduction  cell surface  integral component of membrane  B cell differentiation  intracellular signal transduction  azurophil granule membrane  neutrophil degranulation  membrane raft  regulation of B cell differentiation  B cell receptor signaling pathway  positive regulation of B cell receptor signaling pathway  positive regulation of sequence-specific DNA binding transcription factor activity  
NDEx NetworkNFAM1
Atlas of Cancer Signalling NetworkNFAM1
Wikipedia pathwaysNFAM1
Orthology - Evolution
OrthoDB150372
GeneTree (enSembl)ENSG00000235568
Phylogenetic Trees/Animal Genes : TreeFamNFAM1
HOVERGENQ8NET5
HOGENOMQ8NET5
Homologs : HomoloGeneNFAM1
Homology/Alignments : Family Browser (UCSC)NFAM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNFAM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NFAM1
dbVarNFAM1
ClinVarNFAM1
1000_GenomesNFAM1 
Exome Variant ServerNFAM1
ExAC (Exome Aggregation Consortium)NFAM1 (select the gene name)
Genetic variants : HAPMAP150372
Genomic Variants (DGV)NFAM1 [DGVbeta]
DECIPHERNFAM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNFAM1 
Mutations
ICGC Data PortalNFAM1 
TCGA Data PortalNFAM1 
Broad Tumor PortalNFAM1
OASIS PortalNFAM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNFAM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNFAM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NFAM1
DgiDB (Drug Gene Interaction Database)NFAM1
DoCM (Curated mutations)NFAM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NFAM1 (select a term)
intoGenNFAM1
Cancer3DNFAM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608740   
Orphanet
MedgenNFAM1
Genetic Testing Registry NFAM1
NextProtQ8NET5 [Medical]
TSGene150372
GENETestsNFAM1
Huge Navigator NFAM1 [HugePedia]
snp3D : Map Gene to Disease150372
BioCentury BCIQNFAM1
ClinGenNFAM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150372
Chemical/Pharm GKB GenePA134949664
Clinical trialNFAM1
Miscellaneous
canSAR (ICR)NFAM1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNFAM1
EVEXNFAM1
GoPubMedNFAM1
iHOPNFAM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:44:54 CEST 2017

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