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NFAT5 (nuclear factor of activated T cells 5)

Identity

Alias (NCBI)NF-AT5
NFATL1
NFATZ
OREBP
TONEBP
HGNC (Hugo) NFAT5
HGNC Alias symbTONEBP
KIAA0827
NFATL1
OREBP
NFATZ
NF-AT5
HGNC Alias nametonicity-responsive enhancer binding protein
HGNC Previous namenuclear factor of activated T-cells 5, tonicity-responsive
 nuclear factor of activated T-cells 5
LocusID (NCBI) 10725
Atlas_Id 43657
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 69565966 and ends at 69695690 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCND1 (11q13.3) / NFAT5 (16q22.1)NFAT5 (16q22.1) / FHOD1 (16q22.1)NFAT5 (16q22.1) / HHAT (1q32.2)
NFAT5 (16q22.1) / NFAT5 (16q22.1)NFAT5 (16q22.1) / SNTB2 (16q22.1)NFAT5 (16q22.1) / VPS4A (16q22.1)
NFAT5 (16q22.1) / WWP2 (16q22.1)USP24 (1p32.3) / NFAT5 (16q22.1)NFAT5 16q22.1 / FHOD1 16q22.1
NFAT5 16q22.1 / HHAT 1q32.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NFAT5   7774
Cards
Entrez_Gene (NCBI)NFAT5    nuclear factor of activated T cells 5
AliasesNF-AT5; NFATL1; NFATZ; OREBP; 
TONEBP
GeneCards (Weizmann)NFAT5
Ensembl hg19 (Hinxton)ENSG00000102908 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102908 [Gene_View]  ENSG00000102908 [Sequence]  chr16:69565966-69695690 [Contig_View]  NFAT5 [Vega]
ICGC DataPortalENSG00000102908
TCGA cBioPortalNFAT5
AceView (NCBI)NFAT5
Genatlas (Paris)NFAT5
SOURCE (Princeton)NFAT5
Genetics Home Reference (NIH)NFAT5
Genomic and cartography
GoldenPath hg38 (UCSC)NFAT5  -     chr16:69565966-69695690 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NFAT5  -     16q22.1   [Description]    (hg19-Feb_2009)
GoldenPathNFAT5 - 16q22.1 [CytoView hg19]  NFAT5 - 16q22.1 [CytoView hg38]
ImmunoBaseENSG00000102908
Genome Data Viewer NCBINFAT5 [Mapview hg19]  
OMIM604708   
Gene and transcription
Genbank (Entrez)AA291524 AA321843 AB020634 AF089824 AF134870
RefSeq transcript (Entrez)NM_001113178 NM_001367709 NM_006599 NM_138713 NM_138714 NM_173214 NM_173215
Consensus coding sequences : CCDS (NCBI)NFAT5
Gene ExpressionNFAT5 [ NCBI-GEO ]   NFAT5 [ EBI - ARRAY_EXPRESS ]   NFAT5 [ SEEK ]   NFAT5 [ MEM ]
Gene Expression Viewer (FireBrowse)NFAT5 [ Firebrowse - Broad ]
GenevisibleExpression of NFAT5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10725
GTEX Portal (Tissue expression)NFAT5
Human Protein AtlasENSG00000102908-NFAT5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94916   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94916  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94916
PhosPhoSitePlusO94916
Domaine pattern : Prosite (Expaxy)REL_2 (PS50254)   
Domains : Interpro (EBI)Ig-like_fold    Ig_E-set    IPT_dom    NFAT    NFAT5    p53-like_TF_DNA-bd    RHD_dimer    RHD_DNA_bind_dom    RHD_DNA_bind_dom_sf   
Domain families : Pfam (Sanger)RHD_dimer (PF16179)    RHD_DNA_bind (PF00554)   
Domain families : Pfam (NCBI)pfam16179    pfam00554   
Domain families : Smart (EMBL)IPT (SM00429)  
Conserved Domain (NCBI)NFAT5
PDB (RSDB)1IMH   
PDB Europe1IMH   
PDB (PDBSum)1IMH   
PDB (IMB)1IMH   
Structural Biology KnowledgeBase1IMH   
SCOP (Structural Classification of Proteins)1IMH   
CATH (Classification of proteins structures)1IMH   
SuperfamilyO94916
AlphaFold pdb e-kbO94916   
Human Protein Atlas [tissue]ENSG00000102908-NFAT5 [tissue]
HPRD05272
Protein Interaction databases
DIP (DOE-UCLA)O94916
IntAct (EBI)O94916
BioGRIDNFAT5
STRING (EMBL)NFAT5
ZODIACNFAT5
Ontologies - Pathways
QuickGOO94916
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  cytokine production  DNA-binding transcription factor activity  protein binding  nucleus  nucleoplasm  transcription regulator complex  cytosol  regulation of transcription by RNA polymerase II  transcription by RNA polymerase II  response to osmotic stress  signal transduction  excretion  transcription factor binding  positive regulation of gene expression  calcineurin-NFAT signaling cascade  positive regulation of transcription by RNA polymerase II  regulation of calcineurin-NFAT signaling cascade  cellular response to cytokine stimulus  positive regulation of NIK/NF-kappaB signaling  positive regulation of leukocyte adhesion to vascular endothelial cell  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  cytokine production  DNA-binding transcription factor activity  protein binding  nucleus  nucleoplasm  transcription regulator complex  cytosol  regulation of transcription by RNA polymerase II  transcription by RNA polymerase II  response to osmotic stress  signal transduction  excretion  transcription factor binding  positive regulation of gene expression  calcineurin-NFAT signaling cascade  positive regulation of transcription by RNA polymerase II  regulation of calcineurin-NFAT signaling cascade  cellular response to cytokine stimulus  positive regulation of NIK/NF-kappaB signaling  positive regulation of leukocyte adhesion to vascular endothelial cell  sequence-specific double-stranded DNA binding  
NDEx NetworkNFAT5
Atlas of Cancer Signalling NetworkNFAT5
Wikipedia pathwaysNFAT5
Orthology - Evolution
OrthoDB10725
GeneTree (enSembl)ENSG00000102908
Phylogenetic Trees/Animal Genes : TreeFamNFAT5
Homologs : HomoloGeneNFAT5
Homology/Alignments : Family Browser (UCSC)NFAT5
Gene fusions - Rearrangements
Fusion : MitelmanNFAT5/FHOD1 [16q22.1/16q22.1]  
Fusion : MitelmanNFAT5/HHAT [16q22.1/1q32.2]  
Fusion : MitelmanNFAT5/SNTB2 [16q22.1/16q22.1]  
Fusion : QuiverNFAT5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNFAT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NFAT5
dbVarNFAT5
ClinVarNFAT5
MonarchNFAT5
1000_GenomesNFAT5 
Exome Variant ServerNFAT5
GNOMAD BrowserENSG00000102908
Varsome BrowserNFAT5
ACMGNFAT5 variants
VarityO94916
Genomic Variants (DGV)NFAT5 [DGVbeta]
DECIPHERNFAT5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNFAT5 
Mutations
ICGC Data PortalNFAT5 
TCGA Data PortalNFAT5 
Broad Tumor PortalNFAT5
OASIS PortalNFAT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNFAT5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNFAT5
Mutations and Diseases : HGMDNFAT5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNFAT5
DgiDB (Drug Gene Interaction Database)NFAT5
DoCM (Curated mutations)NFAT5
CIViC (Clinical Interpretations of Variants in Cancer)NFAT5
Cancer3DNFAT5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604708   
Orphanet
DisGeNETNFAT5
MedgenNFAT5
Genetic Testing Registry NFAT5
NextProtO94916 [Medical]
GENETestsNFAT5
Target ValidationNFAT5
Huge Navigator NFAT5 [HugePedia]
ClinGenNFAT5
Clinical trials, drugs, therapy
MyCancerGenomeNFAT5
Protein Interactions : CTDNFAT5
Pharm GKB GenePA31581
PharosO94916
Clinical trialNFAT5
Miscellaneous
canSAR (ICR)NFAT5
HarmonizomeNFAT5
DataMed IndexNFAT5
Probes
Litterature
PubMed134 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNFAT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:22:37 CEST 2021

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