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NFATC1 (nuclear factor of activated T cells 1)

Identity

Alias (NCBI)NF-ATC
NF-ATc1.2
NFAT2
NFATc
HGNC (Hugo) NFATC1
HGNC Alias symbNF-ATC
NFATc
NFAT2
HGNC Previous namenuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
 nuclear factor of activated T-cells 1
LocusID (NCBI) 4772
Atlas_Id 43698
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 79395930 and ends at 79470015 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACVR1 (2q24.1) / NFATC1 (18q23)B4GALNT3 (12p13.33) / NFATC1 (18q23)CTDP1 (18q23) / NFATC1 (18q23)
DAPK3 (19p13.3) / NFATC1 (18q23)EWSR1 (22q12.2) / NFATC1 (18q23)NFATC1 (18q23) / EWSR1 (22q12.2)
NFATC1 (18q23) / NFATC1 (18q23)NFATC1 18q23 / EWSR1 22q12.2ACVR1 2q24.1 / NFATC1 18q23
CTDP1 18q23 / NFATC1 18q23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  i(18)(q10)


External links

Nomenclature
HGNC (Hugo)NFATC1   7775
Cards
Entrez_Gene (NCBI)NFATC1    nuclear factor of activated T cells 1
AliasesNF-ATC; NF-ATc1.2; NFAT2; NFATc
GeneCards (Weizmann)NFATC1
Ensembl hg19 (Hinxton)ENSG00000131196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131196 [Gene_View]  ENSG00000131196 [Sequence]  chr18:79395930-79470015 [Contig_View]  NFATC1 [Vega]
ICGC DataPortalENSG00000131196
TCGA cBioPortalNFATC1
AceView (NCBI)NFATC1
Genatlas (Paris)NFATC1
SOURCE (Princeton)NFATC1
Genetics Home Reference (NIH)NFATC1
Genomic and cartography
GoldenPath hg38 (UCSC)NFATC1  -     chr18:79395930-79470015 +  18q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NFATC1  -     18q23   [Description]    (hg19-Feb_2009)
GoldenPathNFATC1 - 18q23 [CytoView hg19]  NFATC1 - 18q23 [CytoView hg38]
ImmunoBaseENSG00000131196
genome Data Viewer NCBINFATC1 [Mapview hg19]  
OMIM600489   
Gene and transcription
Genbank (Entrez)AA621079 AA679278 AK292641 AK293760 AK309546
RefSeq transcript (Entrez)NM_001278669 NM_001278670 NM_001278672 NM_001278673 NM_001278675 NM_006162 NM_172387 NM_172388 NM_172389 NM_172390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NFATC1
Alternative Splicing GalleryENSG00000131196
Gene ExpressionNFATC1 [ NCBI-GEO ]   NFATC1 [ EBI - ARRAY_EXPRESS ]   NFATC1 [ SEEK ]   NFATC1 [ MEM ]
Gene Expression Viewer (FireBrowse)NFATC1 [ Firebrowse - Broad ]
GenevisibleExpression of NFATC1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4772
GTEX Portal (Tissue expression)NFATC1
Human Protein AtlasENSG00000131196-NFATC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NFATC1
Blocks (Seattle)NFATC1
Human Protein Atlas [tissue]ENSG00000131196-NFATC1 [tissue]
HPRD02729
IPIIPI00032069   IPI00336007   IPI00221155   IPI00221156   IPI00221157   IPI00221158   IPI00759791   IPI00395394   IPI00759774   IPI00975550   IPI01018831   IPI01018646   
Protein Interaction databases
BioGRIDNFATC1
STRING (EMBL)NFATC1
ZODIACNFATC1
Ontologies - Pathways
Litterature
PubMed233 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNFATC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:36:24 CET 2021

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