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NFIC (nuclear factor I C)

Identity

Alias (NCBI)CTF
CTF5
NF-I
NFI
HGNC (Hugo) NFIC
HGNC Alias symbCTF
NF-I
CTF5
HGNC Alias nameCCAAT-binding transcription factor
HGNC Previous nameNFI
HGNC Previous namenuclear factor I/C (CCAAT-binding transcription factor)
LocusID (NCBI) 4782
Atlas_Id 51783
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 3359630 and ends at 3469217 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGAP17 (16p12.1) / NFIC (19p13.3)FZR1 (19p13.3) / NFIC (19p13.3)GRID1 (10q23.1) / NFIC (19p13.3)
LRTOMT (11q13.4) / NFIC (19p13.3)NFIC (19p13.3) / C1orf186 (1q32.1)NFIC (19p13.3) / CELF5 (19p13.3)
NFIC (19p13.3) / NFIC (19p13.3)NFIC (19p13.3) / VSTM4 (10q11.23)NFIC (19p13.3) / WDR18 (19p13.3)
PIP5K1C (19p13.3) / NFIC (19p13.3)STK39 (2q24.3) / NFIC (19p13.3)TM6SF1 (15q25.2) / NFIC (19p13.3)
ZNF653 (19p13.2) / NFIC (19p13.3)FZR1 19p13.3 / NFIC 19p13.3LRTOMT 11q13.4 / NFIC 19p13.3
NFIC 19p13.3 / CELF5 19p13.3NFIC 19p13.3 / WDR18 19p13.3ZNF653 19p13.2 / NFIC 19p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)NFIC   7786
Cards
Entrez_Gene (NCBI)NFIC    nuclear factor I C
AliasesCTF; CTF5; NF-I; NFI
GeneCards (Weizmann)NFIC
Ensembl hg19 (Hinxton)ENSG00000141905 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141905 [Gene_View]  ENSG00000141905 [Sequence]  chr19:3359630-3469217 [Contig_View]  NFIC [Vega]
ICGC DataPortalENSG00000141905
TCGA cBioPortalNFIC
AceView (NCBI)NFIC
Genatlas (Paris)NFIC
SOURCE (Princeton)NFIC
Genetics Home Reference (NIH)NFIC
Genomic and cartography
GoldenPath hg38 (UCSC)NFIC  -     chr19:3359630-3469217 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NFIC  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathNFIC - 19p13.3 [CytoView hg19]  NFIC - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000141905
genome Data Viewer NCBINFIC [Mapview hg19]  
OMIM600729   
Gene and transcription
Genbank (Entrez)AK129956 AK289885 AK297825 AK297867 AK304816
RefSeq transcript (Entrez)NM_001245002 NM_001245004 NM_001245005 NM_005597 NM_205843
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NFIC
Alternative Splicing GalleryENSG00000141905
Gene ExpressionNFIC [ NCBI-GEO ]   NFIC [ EBI - ARRAY_EXPRESS ]   NFIC [ SEEK ]   NFIC [ MEM ]
Gene Expression Viewer (FireBrowse)NFIC [ Firebrowse - Broad ]
GenevisibleExpression of NFIC in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4782
GTEX Portal (Tissue expression)NFIC
Human Protein AtlasENSG00000141905-NFIC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NFIC
Blocks (Seattle)NFIC
Human Protein Atlas [tissue]ENSG00000141905-NFIC [tissue]
IPIIPI00029795   IPI00941207   IPI00218037   IPI00218039   IPI00218041   IPI01026493   IPI01015986   
Protein Interaction databases
BioGRIDNFIC
STRING (EMBL)NFIC
ZODIACNFIC
Ontologies - Pathways
Litterature
PubMed79 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNFIC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:36:26 CET 2021

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