| Nomenclature |
|---|
| HGNC (Hugo) | NFIL3 7787 |
| Cards |
|---|
| Entrez_Gene (NCBI) | NFIL3 4783 nuclear factor, interleukin 3 regulated |
| Aliases | E4BP4; IL3BP1; NF-IL3A; NFIL3A |
| GeneCards (Weizmann) | NFIL3 |
| Ensembl hg19 (Hinxton) | ENSG00000165030 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000165030 [Gene_View] ENSG00000165030 [Sequence] chr9:91409045-91423862 [Contig_View] NFIL3 [Vega] |
| ICGC DataPortal | ENSG00000165030 |
| TCGA cBioPortal | NFIL3 |
| AceView (NCBI) | NFIL3 |
| Genatlas (Paris) | NFIL3 |
| WikiGenes | 4783 |
| SOURCE (Princeton) | NFIL3 |
| Genetics Home Reference (NIH) | NFIL3 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | NFIL3 - chr9:91409045-91423862 - 9q22.31 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | NFIL3 - 9q22.31 [Description] (hg19-Feb_2009) |
| Ensembl | NFIL3 - 9q22.31 [CytoView hg19] NFIL3 - 9q22.31 [CytoView hg38] |
| Mapping of homologs : NCBI | NFIL3 [Mapview hg19] NFIL3 [Mapview hg38] |
| OMIM | 605327 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AK313970 AW163045 BC008197 BQ937243 CR542049 |
| RefSeq transcript (Entrez) | NM_001289999 NM_001290000 NM_005384 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | NFIL3 |
| Cluster EST : Unigene | Hs.79334 [ NCBI ] |
| CGAP (NCI) | Hs.79334 |
| Alternative Splicing Gallery | ENSG00000165030 |
| Gene Expression | NFIL3 [ NCBI-GEO ] NFIL3 [ EBI - ARRAY_EXPRESS ]
NFIL3 [ SEEK ] NFIL3 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | NFIL3 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 4783 |
| GTEX Portal (Tissue expression) | NFIL3 |
| Human Protein Atlas | ENSG00000165030-NFIL3 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q16649 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q16649 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q16649 |
| Splice isoforms : SwissVar | Q16649 |
| PhosPhoSitePlus | Q16649 |
| Domaine pattern : Prosite (Expaxy) | BZIP (PS50217) BZIP_BASIC (PS00036) |
| Domains : Interpro (EBI) | bZIP NFIL3/E4BP4 Vert_IL3-reg_TF |
| Domain families : Pfam (Sanger) | bZIP_2 (PF07716) Vert_IL3-reg_TF (PF06529) |
| Domain families : Pfam (NCBI) | pfam07716 pfam06529 |
| Domain families : Smart (EMBL) | BRLZ (SM00338) |
| Conserved Domain (NCBI) | NFIL3 |
| DMDM Disease mutations | 4783 |
| Blocks (Seattle) | NFIL3 |
| Superfamily | Q16649 |
| Human Protein Atlas [tissue] | ENSG00000165030-NFIL3 [tissue] |
| Peptide Atlas | Q16649 |
| HPRD | 05619 |
| IPI | IPI00290562 IPI00983119 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q16649 |
| IntAct (EBI) | Q16649 |
| FunCoup | ENSG00000165030 |
| BioGRID | NFIL3 |
| STRING (EMBL) | NFIL3 |
| ZODIAC | NFIL3 |
| Ontologies - Pathways |
|---|
| QuickGO | Q16649 |
| Ontology : AmiGO | negative regulation of transcription by RNA polymerase II RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase II proximal promoter sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding DNA binding DNA-binding transcription factor activity transcription corepressor activity protein binding nucleus regulation of transcription, DNA-templated transcription by RNA polymerase II immune response circadian rhythm positive regulation of gene expression identical protein binding cellular response to interleukin-4 |
| Ontology : EGO-EBI | negative regulation of transcription by RNA polymerase II RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase II proximal promoter sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding DNA binding DNA-binding transcription factor activity transcription corepressor activity protein binding nucleus regulation of transcription, DNA-templated transcription by RNA polymerase II immune response circadian rhythm positive regulation of gene expression identical protein binding cellular response to interleukin-4 |
| NDEx Network | NFIL3 |
| Atlas of Cancer Signalling Network | NFIL3 |
| Wikipedia pathways | NFIL3 |
| Orthology - Evolution |
|---|
| OrthoDB | 4783 |
| GeneTree (enSembl) | ENSG00000165030 |
| Phylogenetic Trees/Animal Genes : TreeFam | NFIL3 |
| HOVERGEN | Q16649 |
| HOGENOM | Q16649 |
| Homologs : HomoloGene | NFIL3 |
| Homology/Alignments : Family Browser (UCSC) | NFIL3 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | NFIL3 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | NFIL3 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | NFIL3 |
| dbVar | NFIL3 |
| ClinVar | NFIL3 |
| 1000_Genomes | NFIL3 |
| Exome Variant Server | NFIL3 |
| ExAC (Exome Aggregation Consortium) | ENSG00000165030 |
| GNOMAD Browser | ENSG00000165030 |
| Varsome Browser | NFIL3 |
| Genetic variants : HAPMAP | 4783 |
| Genomic Variants (DGV) | NFIL3 [DGVbeta] |
| DECIPHER | NFIL3 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | NFIL3 |
| Mutations |
|---|
| ICGC Data Portal | NFIL3 |
| TCGA Data Portal | NFIL3 |
| Broad Tumor Portal | NFIL3 |
| OASIS Portal | NFIL3 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | NFIL3 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | NFIL3 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search NFIL3 |
| DgiDB (Drug Gene Interaction Database) | NFIL3 |
| DoCM (Curated mutations) | NFIL3 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | NFIL3 (select a term) |
| intoGen | NFIL3 |
| Cancer3D | NFIL3(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 605327 |
| Orphanet | |
| DisGeNET | NFIL3 |
| Medgen | NFIL3 |
| Genetic Testing Registry | NFIL3
|
| NextProt | Q16649 [Medical] |
| TSGene | 4783 |
| GENETests | NFIL3 |
| Target Validation | NFIL3 |
| Huge Navigator |
NFIL3 [HugePedia] |
| snp3D : Map Gene to Disease | 4783 |
| BioCentury BCIQ | NFIL3 |
| ClinGen | NFIL3 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 4783 |
| Chemical/Pharm GKB Gene | PA31593 |
| Clinical trial | NFIL3 |
| Miscellaneous |
|---|
| canSAR (ICR) | NFIL3 (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 45 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | NFIL3 |
| EVEX | NFIL3 |
| GoPubMed | NFIL3 |
| iHOP | NFIL3 |
