| BSG (19p13.3) / NFIX (19p13.2) | MCU (10q22.1) / NFIX (19p13.2) | NFIX (19p13.2) / CHCHD3 (7q32.3) |
|
NFIX (19p13.2) / DAND5 (19p13.2) | NFIX (19p13.2) / GATAD2A (19p13.11) | NFIX (19p13.2) / GCDH (19p13.2) |
|
NFIX (19p13.2) / MAST1 (19p13.2) | NFIX (19p13.2) / NFIX (19p13.2) | NFIX (19p13.2) / RALGPS1 (9q33.3) |
|
NFIX (19p13.2) / RBM5 (3p21.31) | TBCD (17q25.3) / NFIX (19p13.2) | NFIX 19p13.13 MAST1 |
|
MCU 10q22.1 / NFIX 19p13.2 | NFIX 19p13.2 / DAND5 19p13.2 | NFIX 19p13.2 / GATAD2A 19p13.11 |
|
NFIX 19p13.2 / GCDH 19p13.2 | NFIX 19p13.2 / RALGPS1 9q33.3 | TBCD 17q25.3 / NFIX 19p13.2 |
|
| Nomenclature |
HGNC (Hugo) | NFIX 7788 |
| Cards |
Entrez_Gene (NCBI) | NFIX nuclear factor I X |
Aliases | CTF; MRSHSS; NF-I/X; NF1-X; |
| NF1A; SOTOS2 |
GeneCards (Weizmann) | NFIX |
Ensembl hg19 (Hinxton) | ENSG00000008441 [Gene_View] |
Ensembl hg38 (Hinxton) | ENSG00000008441 [Gene_View]  ENSG00000008441 [Sequence] chr19:12995475-13098784 [Contig_View] NFIX [Vega] |
ICGC DataPortal | ENSG00000008441 |
TCGA cBioPortal | NFIX |
AceView (NCBI) | NFIX |
Genatlas (Paris) | NFIX |
SOURCE (Princeton) | NFIX |
Genetics Home Reference (NIH) | NFIX |
| Genomic and cartography |
GoldenPath hg38 (UCSC) | NFIX - chr19:12995475-13098784 + 19p13.13 [Description] (hg38-Dec_2013) |
GoldenPath hg19 (UCSC) | NFIX - 19p13.13 [Description] (hg19-Feb_2009) |
GoldenPath | NFIX - 19p13.13 [CytoView hg19] NFIX - 19p13.13 [CytoView hg38] |
ImmunoBase | ENSG00000008441 |
genome Data Viewer NCBI | NFIX [Mapview hg19] |
OMIM | 164005 602535 614753 |
| Gene and transcription |
Genbank (Entrez) | AK295290 AK297261 BC036885 BC117113 BC117115 |
RefSeq transcript (Entrez) | NM_001271043 NM_001271044 NM_001365902 NM_001365982 NM_001365983 NM_001365984 NM_001365985 NM_001378404 NM_001378405 NM_002501 |
RefSeq genomic (Entrez) | |
Consensus coding sequences : CCDS (NCBI) | NFIX |
Alternative Splicing Gallery | ENSG00000008441 |
Gene Expression | NFIX [ NCBI-GEO ] NFIX [ EBI - ARRAY_EXPRESS ]
NFIX [ SEEK ] NFIX [ MEM ] |
Gene Expression Viewer (FireBrowse) | NFIX [ Firebrowse - Broad ] |
Genevisible | Expression of NFIX in : [tissues]  [cell-lines]  [cancer]  [perturbations]   |
BioGPS (Tissue expression) | 4784 |
GTEX Portal (Tissue expression) | NFIX |
Human Protein Atlas | ENSG00000008441-NFIX [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
UniProt/SwissProt | Q14938 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
NextProt | Q14938 [Sequence] [Exons] [Medical] [Publications] |
With graphics : InterPro | Q14938 |
Splice isoforms : SwissVar | Q14938 |
PhosPhoSitePlus | Q14938 |
Domaine pattern : Prosite (Expaxy) | CTF_NFI_1 (PS00349) CTF_NFI_2 (PS51080) |
Domains : Interpro (EBI) | CTF/NFI CTF/NFI_DNA-bd-dom CTF/NFI_DNA-bd_CS CTF/NFI_DNA-bd_N MAD_homology1_Dwarfin-type |
Domain families : Pfam (Sanger) | CTF_NFI (PF00859) MH1 (PF03165) NfI_DNAbd_pre-N (PF10524) |
Domain families : Pfam (NCBI) | pfam00859 pfam03165 pfam10524 |
Domain families : Smart (EMBL) | DWA (SM00523) |
Conserved Domain (NCBI) | NFIX |
Blocks (Seattle) | NFIX |
Superfamily | Q14938 |
Human Protein Atlas [tissue] | ENSG00000008441-NFIX [tissue] |
Peptide Atlas | Q14938 |
HPRD | 01234 |
IPI | IPI00221071 IPI00306473 IPI00221073 IPI00395691 IPI00218260 IPI00953207 IPI00011507 IPI00747331 |
| Protein Interaction databases |
DIP (DOE-UCLA) | Q14938 |
IntAct (EBI) | Q14938 |
BioGRID | NFIX |
STRING (EMBL) | NFIX |
ZODIAC | NFIX |
| Ontologies - Pathways |
QuickGO | Q14938 |
Ontology : AmiGO | negative regulation of transcription by RNA polymerase II negative regulation of transcription by RNA polymerase II nuclear chromatin DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA binding DNA-binding transcription factor activity protein binding nucleus DNA replication transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II |
Ontology : EGO-EBI | negative regulation of transcription by RNA polymerase II negative regulation of transcription by RNA polymerase II nuclear chromatin DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA binding DNA-binding transcription factor activity protein binding nucleus DNA replication transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II |
NDEx Network | NFIX |
Atlas of Cancer Signalling Network | NFIX |
Wikipedia pathways | NFIX |
| Orthology - Evolution |
OrthoDB | 4784 |
GeneTree (enSembl) | ENSG00000008441 |
Phylogenetic Trees/Animal Genes : TreeFam | NFIX |
HOGENOM | Q14938 |
Homologs : HomoloGene | NFIX |
Homology/Alignments : Family Browser (UCSC) | NFIX |
| Gene fusions - Rearrangements |
Fusion : Mitelman | BSG/NFIX [19p13.3/19p13.2]   |
Fusion : Mitelman | MCU/NFIX [10q22.1/19p13.2]   |
Fusion : Mitelman | NFIX/DAND5 [19p13.2/19p13.2]   |
Fusion : Mitelman | NFIX/GATAD2A [19p13.2/19p13.11]   |
Fusion : Mitelman | NFIX/GCDH [19p13.2/19p13.2]   |
Fusion : Mitelman | NFIX/MAST1 [19p13.2/19p13.2]   |
Fusion : Mitelman | NFIX/RALGPS1 [19p13.2/9q33.3]   |
Fusion : Mitelman | TBCD/NFIX [17q25.3/19p13.2]   |
Fusion Portal | MCU 10q22.1 NFIX 19p13.2 BRCA |
Fusion Portal | NFIX 19p13.2 DAND5 19p13.2 BRCA LUAD |
Fusion Portal | NFIX 19p13.2 GATAD2A 19p13.11 THCA |
Fusion Portal | NFIX 19p13.2 GCDH 19p13.2 LUAD |
Fusion Portal | NFIX 19p13.2 RALGPS1 9q33.3 HNSC |
Fusion Portal | TBCD 17q25.3 NFIX 19p13.2 BRCA |
Fusion : Quiver | NFIX |
| Polymorphisms : SNP and Copy number variants |
NCBI Variation Viewer | NFIX [hg38] |
dbVar | NFIX |
ClinVar | NFIX |
Monarch | NFIX |
1000_Genomes | NFIX |
Exome Variant Server | NFIX |
GNOMAD Browser | ENSG00000008441 |
Varsome Browser | NFIX |
Genomic Variants (DGV) | NFIX [DGVbeta] |
DECIPHER | NFIX [patients] [syndromes] [variants] [genes] |
CONAN: Copy Number Analysis | NFIX |
| Mutations |
ICGC Data Portal | NFIX |
TCGA Data Portal | NFIX |
Broad Tumor Portal | NFIX |
OASIS Portal | NFIX [ Somatic mutations - Copy number] |
Somatic Mutations in Cancer : COSMIC | NFIX [overview] [genome browser] [tissue] [distribution] |
Somatic Mutations in Cancer : COSMIC3D | NFIX |
Mutations and Diseases : HGMD | NFIX |
LOVD (Leiden Open Variation Database) | Whole genome datasets |
LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
BioMuta | search NFIX |
DgiDB (Drug Gene Interaction Database) | NFIX |
DoCM (Curated mutations) | NFIX (select the gene name) |
CIViC (Clinical Interpretations of Variants in Cancer) | NFIX (select a term) |
intoGen | NFIX |
Cancer3D | NFIX(select the gene name) |
Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
---|
OMIM | 164005 602535 614753 |
Orphanet | 2279 23101 |
DisGeNET | NFIX |
Medgen | NFIX |
Genetic Testing Registry | NFIX
|
NextProt | Q14938 [Medical] |
GENETests | NFIX |
Target Validation | NFIX |
Huge Navigator |
NFIX [HugePedia] |
ClinGen | NFIX (curated) |
| Clinical trials, drugs, therapy |
---|
MyCancerGenome | NFIX |
Protein Interactions : CTD | |
Pharm GKB Gene | PA31594 |
Pharos | Q14938 |
Clinical trial | NFIX |
| Miscellaneous |
---|
canSAR (ICR) | NFIX (select the gene name) |
Harmonizome | NFIX |
DataMed Index | NFIX |
| Probes |
---|
| Litterature |
---|
PubMed | 60 Pubmed reference(s) in Entrez |
GeneRIFs | Gene References Into Functions (Entrez) |
EVEX | NFIX |