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NFKBID (NFKB inhibitor delta)

Identity

Alias_namesnuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta
Alias_symbol (synonym)TA-NFKBH
IkappaBNS
Other alias
HGNC (Hugo) NFKBID
LocusID (NCBI) 84807
Atlas_Id 70816
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35887952 and ends at 35899737 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KMT2E (7q22.3) / NFKBID (19q13.12)NFKBID (19q13.12) / NXF1 (11q12.3)NFKBID (19q13.12) / ZNF585B (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NFKBID   15671
Cards
Entrez_Gene (NCBI)NFKBID  84807  NFKB inhibitor delta
AliasesIkappaBNS; TA-NFKBH
GeneCards (Weizmann)NFKBID
Ensembl hg19 (Hinxton)ENSG00000167604 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167604 [Gene_View]  chr19:35887952-35899737 [Contig_View]  NFKBID [Vega]
ICGC DataPortalENSG00000167604
TCGA cBioPortalNFKBID
AceView (NCBI)NFKBID
Genatlas (Paris)NFKBID
WikiGenes84807
SOURCE (Princeton)NFKBID
Genetics Home Reference (NIH)NFKBID
Genomic and cartography
GoldenPath hg38 (UCSC)NFKBID  -     chr19:35887952-35899737 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NFKBID  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblNFKBID - 19q13.12 [CytoView hg19]  NFKBID - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBINFKBID [Mapview hg19]  NFKBID [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF385433 AF385434 AK126825 BC006273 BC119646
RefSeq transcript (Entrez)NM_001321831 NM_139239
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NFKBID
Cluster EST : UnigeneHs.466531 [ NCBI ]
CGAP (NCI)Hs.466531
Alternative Splicing GalleryENSG00000167604
Gene ExpressionNFKBID [ NCBI-GEO ]   NFKBID [ EBI - ARRAY_EXPRESS ]   NFKBID [ SEEK ]   NFKBID [ MEM ]
Gene Expression Viewer (FireBrowse)NFKBID [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84807
GTEX Portal (Tissue expression)NFKBID
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NI38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NI38
Splice isoforms : SwissVarQ8NI38
PhosPhoSitePlusQ8NI38
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)NFKBID
DMDM Disease mutations84807
Blocks (Seattle)NFKBID
SuperfamilyQ8NI38
Human Protein AtlasENSG00000167604
Peptide AtlasQ8NI38
HPRD18140
IPIIPI00398856   IPI00169329   IPI00646438   IPI00981419   
Protein Interaction databases
DIP (DOE-UCLA)Q8NI38
IntAct (EBI)Q8NI38
FunCoupENSG00000167604
BioGRIDNFKBID
STRING (EMBL)NFKBID
ZODIACNFKBID
Ontologies - Pathways
QuickGOQ8NI38
Ontology : AmiGOtranscription cofactor activity  protein binding  nucleus  regulation of transcription from RNA polymerase II promoter  inflammatory response  negative regulation of NF-kappaB transcription factor activity  negative regulation of T cell differentiation in thymus  negative regulation of I-kappaB kinase/NF-kappaB signaling  NF-kappaB binding  positive regulation of thymocyte apoptotic process  
Ontology : EGO-EBItranscription cofactor activity  protein binding  nucleus  regulation of transcription from RNA polymerase II promoter  inflammatory response  negative regulation of NF-kappaB transcription factor activity  negative regulation of T cell differentiation in thymus  negative regulation of I-kappaB kinase/NF-kappaB signaling  NF-kappaB binding  positive regulation of thymocyte apoptotic process  
NDEx NetworkNFKBID
Atlas of Cancer Signalling NetworkNFKBID
Wikipedia pathwaysNFKBID
Orthology - Evolution
OrthoDB84807
GeneTree (enSembl)ENSG00000167604
Phylogenetic Trees/Animal Genes : TreeFamNFKBID
HOVERGENQ8NI38
HOGENOMQ8NI38
Homologs : HomoloGeneNFKBID
Homology/Alignments : Family Browser (UCSC)NFKBID
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNFKBID [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NFKBID
dbVarNFKBID
ClinVarNFKBID
1000_GenomesNFKBID 
Exome Variant ServerNFKBID
ExAC (Exome Aggregation Consortium)NFKBID (select the gene name)
Genetic variants : HAPMAP84807
Genomic Variants (DGV)NFKBID [DGVbeta]
DECIPHERNFKBID [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNFKBID 
Mutations
ICGC Data PortalNFKBID 
TCGA Data PortalNFKBID 
Broad Tumor PortalNFKBID
OASIS PortalNFKBID [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNFKBID  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNFKBID
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NFKBID
DgiDB (Drug Gene Interaction Database)NFKBID
DoCM (Curated mutations)NFKBID (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NFKBID (select a term)
intoGenNFKBID
Cancer3DNFKBID(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNFKBID
Genetic Testing Registry NFKBID
NextProtQ8NI38 [Medical]
TSGene84807
GENETestsNFKBID
Target ValidationNFKBID
Huge Navigator NFKBID [HugePedia]
snp3D : Map Gene to Disease84807
BioCentury BCIQNFKBID
ClinGenNFKBID
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84807
Chemical/Pharm GKB GenePA162397453
Clinical trialNFKBID
Miscellaneous
canSAR (ICR)NFKBID (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNFKBID
EVEXNFKBID
GoPubMedNFKBID
iHOPNFKBID
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:36 CEST 2017

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