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NFKBIL1 (NFKB inhibitor like 1)

Identity

Alias_namesNFKBIL
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1
Alias_symbol (synonym)IKBL
Other aliasLST1
HGNC (Hugo) NFKBIL1
LocusID (NCBI) 4795
Atlas_Id 50494
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31515353 and ends at 31526606 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NFKBIL1   7800
Cards
Entrez_Gene (NCBI)NFKBIL1  4795  NFKB inhibitor like 1
AliasesIKBL; LST1; NFKBIL
GeneCards (Weizmann)NFKBIL1
Ensembl hg19 (Hinxton)ENSG00000204498 [Gene_View]  chr6:31515353-31526606 [Contig_View]  NFKBIL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204498 [Gene_View]  chr6:31515353-31526606 [Contig_View]  NFKBIL1 [Vega]
ICGC DataPortalENSG00000204498
TCGA cBioPortalNFKBIL1
AceView (NCBI)NFKBIL1
Genatlas (Paris)NFKBIL1
WikiGenes4795
SOURCE (Princeton)NFKBIL1
Genetics Home Reference (NIH)NFKBIL1
Genomic and cartography
GoldenPath hg19 (UCSC)NFKBIL1  -     chr6:31515353-31526606 +  6p21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NFKBIL1  -     6p21.33   [Description]    (hg38-Dec_2013)
EnsemblNFKBIL1 - 6p21.33 [CytoView hg19]  NFKBIL1 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBINFKBIL1 [Mapview hg19]  NFKBIL1 [Mapview hg38]
OMIM180300   601022   
Gene and transcription
Genbank (Entrez)AF097419 AF097420 AF097421 AF097422 AF097423
RefSeq transcript (Entrez)NM_001144961 NM_001144962 NM_001144963 NM_005007
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_012344 NT_007592 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249 NW_004929326
Consensus coding sequences : CCDS (NCBI)NFKBIL1
Cluster EST : UnigeneHs.2764 [ NCBI ]
CGAP (NCI)Hs.2764
Alternative Splicing GalleryENSG00000204498
Gene ExpressionNFKBIL1 [ NCBI-GEO ]   NFKBIL1 [ EBI - ARRAY_EXPRESS ]   NFKBIL1 [ SEEK ]   NFKBIL1 [ MEM ]
Gene Expression Viewer (FireBrowse)NFKBIL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4795
GTEX Portal (Tissue expression)NFKBIL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBC1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBC1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBC1
Splice isoforms : SwissVarQ9UBC1
PhosPhoSitePlusQ9UBC1
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)NFKBIL1
DMDM Disease mutations4795
Blocks (Seattle)NFKBIL1
SuperfamilyQ9UBC1
Human Protein AtlasENSG00000204498
Peptide AtlasQ9UBC1
HPRD07043
IPIIPI00172482   IPI00853446   IPI01009187   IPI01022103   IPI00921099   IPI00646385   IPI00647926   IPI00976796   IPI00642394   IPI00640668   IPI00978587   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBC1
IntAct (EBI)Q9UBC1
FunCoupENSG00000204498
BioGRIDNFKBIL1
STRING (EMBL)NFKBIL1
ZODIACNFKBIL1
Ontologies - Pathways
QuickGOQ9UBC1
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  cytosol  I-kappaB kinase/NF-kappaB signaling  negative regulation of lipopolysaccharide-mediated signaling pathway  negative regulation of NF-kappaB transcription factor activity  negative regulation of tumor necrosis factor production  negative regulation of toll-like receptor signaling pathway  cytoplasmic sequestering of transcription factor  intermediate filament cytoskeleton  cellular response to lipopolysaccharide  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  cytosol  I-kappaB kinase/NF-kappaB signaling  negative regulation of lipopolysaccharide-mediated signaling pathway  negative regulation of NF-kappaB transcription factor activity  negative regulation of tumor necrosis factor production  negative regulation of toll-like receptor signaling pathway  cytoplasmic sequestering of transcription factor  intermediate filament cytoskeleton  cellular response to lipopolysaccharide  
NDEx NetworkNFKBIL1
Atlas of Cancer Signalling NetworkNFKBIL1
Wikipedia pathwaysNFKBIL1
Orthology - Evolution
OrthoDB4795
GeneTree (enSembl)ENSG00000204498
Phylogenetic Trees/Animal Genes : TreeFamNFKBIL1
HOVERGENQ9UBC1
HOGENOMQ9UBC1
Homologs : HomoloGeneNFKBIL1
Homology/Alignments : Family Browser (UCSC)NFKBIL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNFKBIL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NFKBIL1
dbVarNFKBIL1
ClinVarNFKBIL1
1000_GenomesNFKBIL1 
Exome Variant ServerNFKBIL1
ExAC (Exome Aggregation Consortium)NFKBIL1 (select the gene name)
Genetic variants : HAPMAP4795
Genomic Variants (DGV)NFKBIL1 [DGVbeta]
DECIPHER (Syndromes)6:31515353-31526606  ENSG00000204498
CONAN: Copy Number AnalysisNFKBIL1 
Mutations
ICGC Data PortalNFKBIL1 
TCGA Data PortalNFKBIL1 
Broad Tumor PortalNFKBIL1
OASIS PortalNFKBIL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNFKBIL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNFKBIL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NFKBIL1
DgiDB (Drug Gene Interaction Database)NFKBIL1
DoCM (Curated mutations)NFKBIL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NFKBIL1 (select a term)
intoGenNFKBIL1
Cancer3DNFKBIL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180300    601022   
Orphanet
MedgenNFKBIL1
Genetic Testing Registry NFKBIL1
NextProtQ9UBC1 [Medical]
TSGene4795
GENETestsNFKBIL1
Huge Navigator NFKBIL1 [HugePedia]
snp3D : Map Gene to Disease4795
BioCentury BCIQNFKBIL1
ClinGenNFKBIL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4795
Chemical/Pharm GKB GenePA31604
Clinical trialNFKBIL1
Miscellaneous
canSAR (ICR)NFKBIL1 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNFKBIL1
EVEXNFKBIL1
GoPubMedNFKBIL1
iHOPNFKBIL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:12:12 CEST 2017

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