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NGB (neuroglobin)

Identity

Other alias-
HGNC (Hugo) NGB
LocusID (NCBI) 58157
Atlas_Id 52638
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 77265491 and ends at 77271312 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD74 (5q32) / NGB (14q24.3)NGB (14q24.3) / BCL2 (18q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NGB   14077
Cards
Entrez_Gene (NCBI)NGB  58157  neuroglobin
Aliases
GeneCards (Weizmann)NGB
Ensembl hg19 (Hinxton)ENSG00000165553 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165553 [Gene_View]  chr14:77265491-77271312 [Contig_View]  NGB [Vega]
ICGC DataPortalENSG00000165553
TCGA cBioPortalNGB
AceView (NCBI)NGB
Genatlas (Paris)NGB
WikiGenes58157
SOURCE (Princeton)NGB
Genetics Home Reference (NIH)NGB
Genomic and cartography
GoldenPath hg38 (UCSC)NGB  -     chr14:77265491-77271312 -  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NGB  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblNGB - 14q24.3 [CytoView hg19]  NGB - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBINGB [Mapview hg19]  NGB [Mapview hg38]
OMIM605304   
Gene and transcription
Genbank (Entrez)AF422797 AJ245946 AK098350 AK315395 BC032509
RefSeq transcript (Entrez)NM_021257
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NGB
Cluster EST : UnigeneHs.274363 [ NCBI ]
CGAP (NCI)Hs.274363
Alternative Splicing GalleryENSG00000165553
Gene ExpressionNGB [ NCBI-GEO ]   NGB [ EBI - ARRAY_EXPRESS ]   NGB [ SEEK ]   NGB [ MEM ]
Gene Expression Viewer (FireBrowse)NGB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58157
GTEX Portal (Tissue expression)NGB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPG2
Splice isoforms : SwissVarQ9NPG2
PhosPhoSitePlusQ9NPG2
Domaine pattern : Prosite (Expaxy)GLOBIN (PS01033)   
Domains : Interpro (EBI)Globin    Globin-like    Globin/Proto   
Domain families : Pfam (Sanger)Globin (PF00042)   
Domain families : Pfam (NCBI)pfam00042   
Conserved Domain (NCBI)NGB
DMDM Disease mutations58157
Blocks (Seattle)NGB
PDB (SRS)1OJ6    4MPM   
PDB (PDBSum)1OJ6    4MPM   
PDB (IMB)1OJ6    4MPM   
PDB (RSDB)1OJ6    4MPM   
Structural Biology KnowledgeBase1OJ6    4MPM   
SCOP (Structural Classification of Proteins)1OJ6    4MPM   
CATH (Classification of proteins structures)1OJ6    4MPM   
SuperfamilyQ9NPG2
Human Protein AtlasENSG00000165553
Peptide AtlasQ9NPG2
HPRD05602
IPIIPI00009758   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPG2
IntAct (EBI)Q9NPG2
FunCoupENSG00000165553
BioGRIDNGB
STRING (EMBL)NGB
ZODIACNGB
Ontologies - Pathways
QuickGOQ9NPG2
Ontology : AmiGOoxygen transporter activity  protein binding  mitochondrion  apoptotic process  oxygen transport  oxygen binding  heme binding  perikaryon  metal ion binding  
Ontology : EGO-EBIoxygen transporter activity  protein binding  mitochondrion  apoptotic process  oxygen transport  oxygen binding  heme binding  perikaryon  metal ion binding  
NDEx NetworkNGB
Atlas of Cancer Signalling NetworkNGB
Wikipedia pathwaysNGB
Orthology - Evolution
OrthoDB58157
GeneTree (enSembl)ENSG00000165553
Phylogenetic Trees/Animal Genes : TreeFamNGB
HOVERGENQ9NPG2
HOGENOMQ9NPG2
Homologs : HomoloGeneNGB
Homology/Alignments : Family Browser (UCSC)NGB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNGB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NGB
dbVarNGB
ClinVarNGB
1000_GenomesNGB 
Exome Variant ServerNGB
ExAC (Exome Aggregation Consortium)NGB (select the gene name)
Genetic variants : HAPMAP58157
Genomic Variants (DGV)NGB [DGVbeta]
DECIPHERNGB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNGB 
Mutations
ICGC Data PortalNGB 
TCGA Data PortalNGB 
Broad Tumor PortalNGB
OASIS PortalNGB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNGB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNGB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NGB
DgiDB (Drug Gene Interaction Database)NGB
DoCM (Curated mutations)NGB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NGB (select a term)
intoGenNGB
Cancer3DNGB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605304   
Orphanet
MedgenNGB
Genetic Testing Registry NGB
NextProtQ9NPG2 [Medical]
TSGene58157
GENETestsNGB
Huge Navigator NGB [HugePedia]
snp3D : Map Gene to Disease58157
BioCentury BCIQNGB
ClinGenNGB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58157
Chemical/Pharm GKB GenePA31612
Clinical trialNGB
Miscellaneous
canSAR (ICR)NGB (select the gene name)
Probes
Litterature
PubMed81 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNGB
EVEXNGB
GoPubMedNGB
iHOPNGB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:28:37 CEST 2017

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