Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NGDN (neuroguidin)

Identity

Alias_namesC14orf120
chromosome 14 open reading frame 120
neuroguidin, EIF4E binding protein
Alias_symbol (synonym)DKFZP564O092
LCP5
lpd-2
NGD
CANu1
Other alias
HGNC (Hugo) NGDN
LocusID (NCBI) 25983
Atlas_Id 864
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 23938898 and ends at 23947402 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NGDN   20271
Cards
Entrez_Gene (NCBI)NGDN  25983  neuroguidin
AliasesC14orf120; CANu1; LCP5; NGD; 
lpd-2
GeneCards (Weizmann)NGDN
Ensembl hg19 (Hinxton)ENSG00000129460 [Gene_View]  chr14:23938898-23947402 [Contig_View]  NGDN [Vega]
Ensembl hg38 (Hinxton)ENSG00000129460 [Gene_View]  chr14:23938898-23947402 [Contig_View]  NGDN [Vega]
ICGC DataPortalENSG00000129460
TCGA cBioPortalNGDN
AceView (NCBI)NGDN
Genatlas (Paris)NGDN
WikiGenes25983
SOURCE (Princeton)NGDN
Genetics Home Reference (NIH)NGDN
Genomic and cartography
GoldenPath hg19 (UCSC)NGDN  -     chr14:23938898-23947402 +  14q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NGDN  -     14q11.2   [Description]    (hg38-Dec_2013)
EnsemblNGDN - 14q11.2 [CytoView hg19]  NGDN - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBINGDN [Mapview hg19]  NGDN [Mapview hg38]
OMIM610777   
Gene and transcription
Genbank (Entrez)AK022215 AK124318 AK291875 AL050003 BC030817
RefSeq transcript (Entrez)NM_001042635 NM_015514
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)NGDN
Cluster EST : UnigeneHs.9043 [ NCBI ]
CGAP (NCI)Hs.9043
Alternative Splicing GalleryENSG00000129460
Gene ExpressionNGDN [ NCBI-GEO ]   NGDN [ EBI - ARRAY_EXPRESS ]   NGDN [ SEEK ]   NGDN [ MEM ]
Gene Expression Viewer (FireBrowse)NGDN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25983
GTEX Portal (Tissue expression)NGDN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEJ9
Splice isoforms : SwissVarQ8NEJ9
PhosPhoSitePlusQ8NEJ9
Domains : Interpro (EBI)Sas10/Utp3/C1D   
Domain families : Pfam (Sanger)Sas10_Utp3 (PF04000)   
Domain families : Pfam (NCBI)pfam04000   
Conserved Domain (NCBI)NGDN
DMDM Disease mutations25983
Blocks (Seattle)NGDN
SuperfamilyQ8NEJ9
Human Protein AtlasENSG00000129460
Peptide AtlasQ8NEJ9
IPIIPI00000162   IPI00410360   IPI01026414   IPI01026533   IPI01025771   IPI01025895   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEJ9
IntAct (EBI)Q8NEJ9
FunCoupENSG00000129460
BioGRIDNGDN
STRING (EMBL)NGDN
ZODIACNGDN
Ontologies - Pathways
QuickGOQ8NEJ9
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  chromosome, centromeric region  protein binding  nucleolus  cytoplasm  regulation of translation  filopodium  axon  dendrite  small-subunit processome  poly(A) RNA binding  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  chromosome, centromeric region  protein binding  nucleolus  cytoplasm  regulation of translation  filopodium  axon  dendrite  small-subunit processome  poly(A) RNA binding  
NDEx NetworkNGDN
Atlas of Cancer Signalling NetworkNGDN
Wikipedia pathwaysNGDN
Orthology - Evolution
OrthoDB25983
GeneTree (enSembl)ENSG00000129460
Phylogenetic Trees/Animal Genes : TreeFamNGDN
HOVERGENQ8NEJ9
HOGENOMQ8NEJ9
Homologs : HomoloGeneNGDN
Homology/Alignments : Family Browser (UCSC)NGDN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNGDN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NGDN
dbVarNGDN
ClinVarNGDN
1000_GenomesNGDN 
Exome Variant ServerNGDN
ExAC (Exome Aggregation Consortium)NGDN (select the gene name)
Genetic variants : HAPMAP25983
Genomic Variants (DGV)NGDN [DGVbeta]
DECIPHER (Syndromes)14:23938898-23947402  ENSG00000129460
CONAN: Copy Number AnalysisNGDN 
Mutations
ICGC Data PortalNGDN 
TCGA Data PortalNGDN 
Broad Tumor PortalNGDN
OASIS PortalNGDN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNGDN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNGDN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NGDN
DgiDB (Drug Gene Interaction Database)NGDN
DoCM (Curated mutations)NGDN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NGDN (select a term)
intoGenNGDN
Cancer3DNGDN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610777   
Orphanet
MedgenNGDN
Genetic Testing Registry NGDN
NextProtQ8NEJ9 [Medical]
TSGene25983
GENETestsNGDN
Huge Navigator NGDN [HugePedia]
snp3D : Map Gene to Disease25983
BioCentury BCIQNGDN
ClinGenNGDN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25983
Chemical/Pharm GKB GenePA134957933
Clinical trialNGDN
Miscellaneous
canSAR (ICR)NGDN (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNGDN
EVEXNGDN
GoPubMedNGDN
iHOPNGDN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 15:12:13 CEST 2017

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