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NGRN (neugrin, neurite outgrowth associated)

Identity

Alias_symbol (synonym)DSC92
Other alias
HGNC (Hugo) NGRN
LocusID (NCBI) 51335
Atlas_Id 70821
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 90265663 and ends at 90272211 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NGRN   18077
Cards
Entrez_Gene (NCBI)NGRN  51335  neugrin, neurite outgrowth associated
AliasesDSC92
GeneCards (Weizmann)NGRN
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:90265663-90272211 [Contig_View]  NGRN [Vega]
TCGA cBioPortalNGRN
AceView (NCBI)NGRN
Genatlas (Paris)NGRN
WikiGenes51335
SOURCE (Princeton)NGRN
Genetics Home Reference (NIH)NGRN
Genomic and cartography
GoldenPath hg38 (UCSC)NGRN  -     chr15:90265663-90272211 +  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NGRN  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblNGRN - 15q26.1 [CytoView hg19]  NGRN - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBINGRN [Mapview hg19]  NGRN [Mapview hg38]
OMIM616718   
Gene and transcription
Genbank (Entrez)AB029315 AF225423 AF242770 AI865397 AK312641
RefSeq transcript (Entrez)NM_001033088 NM_016645
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NGRN
Cluster EST : UnigeneHs.715556 [ NCBI ]
CGAP (NCI)Hs.715556
Gene ExpressionNGRN [ NCBI-GEO ]   NGRN [ EBI - ARRAY_EXPRESS ]   NGRN [ SEEK ]   NGRN [ MEM ]
Gene Expression Viewer (FireBrowse)NGRN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51335
GTEX Portal (Tissue expression)NGRN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPE2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPE2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPE2
Splice isoforms : SwissVarQ9NPE2
PhosPhoSitePlusQ9NPE2
Domains : Interpro (EBI)NGRN/Rrg9   
Domain families : Pfam (Sanger)Neugrin (PF06413)   
Domain families : Pfam (NCBI)pfam06413   
Conserved Domain (NCBI)NGRN
DMDM Disease mutations51335
Blocks (Seattle)NGRN
SuperfamilyQ9NPE2
Peptide AtlasQ9NPE2
HPRD14825
IPIIPI00651737   IPI00792526   IPI00010282   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPE2
IntAct (EBI)Q9NPE2
BioGRIDNGRN
STRING (EMBL)NGRN
ZODIACNGRN
Ontologies - Pathways
QuickGOQ9NPE2
Ontology : AmiGORNA binding  extracellular region  nucleus  nucleus  neuron differentiation  
Ontology : EGO-EBIRNA binding  extracellular region  nucleus  nucleus  neuron differentiation  
NDEx NetworkNGRN
Atlas of Cancer Signalling NetworkNGRN
Wikipedia pathwaysNGRN
Orthology - Evolution
OrthoDB51335
Phylogenetic Trees/Animal Genes : TreeFamNGRN
HOVERGENQ9NPE2
HOGENOMQ9NPE2
Homologs : HomoloGeneNGRN
Homology/Alignments : Family Browser (UCSC)NGRN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNGRN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NGRN
dbVarNGRN
ClinVarNGRN
1000_GenomesNGRN 
Exome Variant ServerNGRN
ExAC (Exome Aggregation Consortium)NGRN (select the gene name)
Genetic variants : HAPMAP51335
Genomic Variants (DGV)NGRN [DGVbeta]
DECIPHERNGRN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNGRN 
Mutations
ICGC Data PortalNGRN 
TCGA Data PortalNGRN 
Broad Tumor PortalNGRN
OASIS PortalNGRN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNGRN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNGRN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NGRN
DgiDB (Drug Gene Interaction Database)NGRN
DoCM (Curated mutations)NGRN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NGRN (select a term)
intoGenNGRN
Cancer3DNGRN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616718   
Orphanet
MedgenNGRN
Genetic Testing Registry NGRN
NextProtQ9NPE2 [Medical]
TSGene51335
GENETestsNGRN
Huge Navigator NGRN [HugePedia]
snp3D : Map Gene to Disease51335
BioCentury BCIQNGRN
ClinGenNGRN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51335
Chemical/Pharm GKB GenePA142671265
Clinical trialNGRN
Miscellaneous
canSAR (ICR)NGRN (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNGRN
EVEXNGRN
GoPubMedNGRN
iHOPNGRN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:44:56 CEST 2017

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