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NHLRC2 (NHL repeat containing 2)

Identity

Alias_symbol (synonym)FLJ25621
FLJ20147
FLJ33312
MGC45492
DKFZp779F115
Other alias-
HGNC (Hugo) NHLRC2
LocusID (NCBI) 374354
Atlas_Id 70824
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 113854632 and ends at 113912506 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NHLRC2   24731
Cards
Entrez_Gene (NCBI)NHLRC2  374354  NHL repeat containing 2
Aliases
GeneCards (Weizmann)NHLRC2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:113854632-113912506 [Contig_View]  NHLRC2 [Vega]
TCGA cBioPortalNHLRC2
AceView (NCBI)NHLRC2
Genatlas (Paris)NHLRC2
WikiGenes374354
SOURCE (Princeton)NHLRC2
Genetics Home Reference (NIH)NHLRC2
Genomic and cartography
GoldenPath hg38 (UCSC)NHLRC2  -     chr10:113854632-113912506 +  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NHLRC2  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblNHLRC2 - 10q25.3 [CytoView hg19]  NHLRC2 - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBINHLRC2 [Mapview hg19]  NHLRC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000154 AK090631 AK098487 AK126751 AL832090
RefSeq transcript (Entrez)NM_198514
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NHLRC2
Cluster EST : UnigeneHs.594372 [ NCBI ]
CGAP (NCI)Hs.594372
Gene ExpressionNHLRC2 [ NCBI-GEO ]   NHLRC2 [ EBI - ARRAY_EXPRESS ]   NHLRC2 [ SEEK ]   NHLRC2 [ MEM ]
Gene Expression Viewer (FireBrowse)NHLRC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374354
GTEX Portal (Tissue expression)NHLRC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBF2
Splice isoforms : SwissVarQ8NBF2
PhosPhoSitePlusQ8NBF2
Domaine pattern : Prosite (Expaxy)NHL (PS51125)    THIOREDOXIN_2 (PS51352)   
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    NHL_repeat    NHL_repeat_subgr    Thioredoxin-like_fold    Thioredoxin_domain   
Domain families : Pfam (Sanger)NHL (PF01436)    Thioredoxin_8 (PF13905)   
Domain families : Pfam (NCBI)pfam01436    pfam13905   
Conserved Domain (NCBI)NHLRC2
DMDM Disease mutations374354
Blocks (Seattle)NHLRC2
SuperfamilyQ8NBF2
Peptide AtlasQ8NBF2
HPRD14827
IPIIPI00301051   IPI00878166   IPI00014953   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBF2
IntAct (EBI)Q8NBF2
BioGRIDNHLRC2
STRING (EMBL)NHLRC2
ZODIACNHLRC2
Ontologies - Pathways
QuickGOQ8NBF2
Ontology : AmiGOplatelet degranulation  protein binding  extracellular region  platelet alpha granule lumen  cell redox homeostasis  
Ontology : EGO-EBIplatelet degranulation  protein binding  extracellular region  platelet alpha granule lumen  cell redox homeostasis  
NDEx NetworkNHLRC2
Atlas of Cancer Signalling NetworkNHLRC2
Wikipedia pathwaysNHLRC2
Orthology - Evolution
OrthoDB374354
Phylogenetic Trees/Animal Genes : TreeFamNHLRC2
HOVERGENQ8NBF2
HOGENOMQ8NBF2
Homologs : HomoloGeneNHLRC2
Homology/Alignments : Family Browser (UCSC)NHLRC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNHLRC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NHLRC2
dbVarNHLRC2
ClinVarNHLRC2
1000_GenomesNHLRC2 
Exome Variant ServerNHLRC2
ExAC (Exome Aggregation Consortium)NHLRC2 (select the gene name)
Genetic variants : HAPMAP374354
Genomic Variants (DGV)NHLRC2 [DGVbeta]
DECIPHERNHLRC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNHLRC2 
Mutations
ICGC Data PortalNHLRC2 
TCGA Data PortalNHLRC2 
Broad Tumor PortalNHLRC2
OASIS PortalNHLRC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNHLRC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNHLRC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NHLRC2
DgiDB (Drug Gene Interaction Database)NHLRC2
DoCM (Curated mutations)NHLRC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NHLRC2 (select a term)
intoGenNHLRC2
Cancer3DNHLRC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNHLRC2
Genetic Testing Registry NHLRC2
NextProtQ8NBF2 [Medical]
TSGene374354
GENETestsNHLRC2
Target ValidationNHLRC2
Huge Navigator NHLRC2 [HugePedia]
snp3D : Map Gene to Disease374354
BioCentury BCIQNHLRC2
ClinGenNHLRC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374354
Chemical/Pharm GKB GenePA134883896
Clinical trialNHLRC2
Miscellaneous
canSAR (ICR)NHLRC2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNHLRC2
EVEXNHLRC2
GoPubMedNHLRC2
iHOPNHLRC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:38 CEST 2017

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