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NHLRC3 (NHL repeat containing 3)

Identity

Other alias-
HGNC (Hugo) NHLRC3
LocusID (NCBI) 387921
Atlas_Id 70825
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 39038311 and ends at 39050107 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NHLRC3 (13q13.3) / PHIP (6q14.1)NHLRC3 (13q13.3) / PROSER1 (13q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NHLRC3   33751
Cards
Entrez_Gene (NCBI)NHLRC3  387921  NHL repeat containing 3
Aliases
GeneCards (Weizmann)NHLRC3
Ensembl hg19 (Hinxton)ENSG00000188811 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188811 [Gene_View]  chr13:39038311-39050107 [Contig_View]  NHLRC3 [Vega]
ICGC DataPortalENSG00000188811
TCGA cBioPortalNHLRC3
AceView (NCBI)NHLRC3
Genatlas (Paris)NHLRC3
WikiGenes387921
SOURCE (Princeton)NHLRC3
Genetics Home Reference (NIH)NHLRC3
Genomic and cartography
GoldenPath hg38 (UCSC)NHLRC3  -     chr13:39038311-39050107 +  13q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NHLRC3  -     13q13.3   [Description]    (hg19-Feb_2009)
EnsemblNHLRC3 - 13q13.3 [CytoView hg19]  NHLRC3 - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBINHLRC3 [Mapview hg19]  NHLRC3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK299198 AK300260 AL833329 BC052492 BC140877
RefSeq transcript (Entrez)NM_001012754 NM_001017370
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NHLRC3
Cluster EST : UnigeneHs.507783 [ NCBI ]
CGAP (NCI)Hs.507783
Alternative Splicing GalleryENSG00000188811
Gene ExpressionNHLRC3 [ NCBI-GEO ]   NHLRC3 [ EBI - ARRAY_EXPRESS ]   NHLRC3 [ SEEK ]   NHLRC3 [ MEM ]
Gene Expression Viewer (FireBrowse)NHLRC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387921
GTEX Portal (Tissue expression)NHLRC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JS37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JS37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JS37
Splice isoforms : SwissVarQ5JS37
PhosPhoSitePlusQ5JS37
Domaine pattern : Prosite (Expaxy)NHL (PS51125)   
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    NHL_repeat    NHL_repeat_subgr   
Domain families : Pfam (Sanger)NHL (PF01436)   
Domain families : Pfam (NCBI)pfam01436   
Conserved Domain (NCBI)NHLRC3
DMDM Disease mutations387921
Blocks (Seattle)NHLRC3
SuperfamilyQ5JS37
Human Protein AtlasENSG00000188811
Peptide AtlasQ5JS37
HPRD18377
IPIIPI00552937   IPI01011617   IPI00556271   IPI00946232   
Protein Interaction databases
DIP (DOE-UCLA)Q5JS37
IntAct (EBI)Q5JS37
FunCoupENSG00000188811
BioGRIDNHLRC3
STRING (EMBL)NHLRC3
ZODIACNHLRC3
Ontologies - Pathways
QuickGOQ5JS37
Ontology : AmiGOextracellular region  azurophil granule lumen  neutrophil degranulation  extracellular exosome  
Ontology : EGO-EBIextracellular region  azurophil granule lumen  neutrophil degranulation  extracellular exosome  
NDEx NetworkNHLRC3
Atlas of Cancer Signalling NetworkNHLRC3
Wikipedia pathwaysNHLRC3
Orthology - Evolution
OrthoDB387921
GeneTree (enSembl)ENSG00000188811
Phylogenetic Trees/Animal Genes : TreeFamNHLRC3
HOVERGENQ5JS37
HOGENOMQ5JS37
Homologs : HomoloGeneNHLRC3
Homology/Alignments : Family Browser (UCSC)NHLRC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNHLRC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NHLRC3
dbVarNHLRC3
ClinVarNHLRC3
1000_GenomesNHLRC3 
Exome Variant ServerNHLRC3
ExAC (Exome Aggregation Consortium)NHLRC3 (select the gene name)
Genetic variants : HAPMAP387921
Genomic Variants (DGV)NHLRC3 [DGVbeta]
DECIPHERNHLRC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNHLRC3 
Mutations
ICGC Data PortalNHLRC3 
TCGA Data PortalNHLRC3 
Broad Tumor PortalNHLRC3
OASIS PortalNHLRC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNHLRC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNHLRC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NHLRC3
DgiDB (Drug Gene Interaction Database)NHLRC3
DoCM (Curated mutations)NHLRC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NHLRC3 (select a term)
intoGenNHLRC3
Cancer3DNHLRC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNHLRC3
Genetic Testing Registry NHLRC3
NextProtQ5JS37 [Medical]
TSGene387921
GENETestsNHLRC3
Target ValidationNHLRC3
Huge Navigator NHLRC3 [HugePedia]
snp3D : Map Gene to Disease387921
BioCentury BCIQNHLRC3
ClinGenNHLRC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387921
Chemical/Pharm GKB GenePA162397544
Clinical trialNHLRC3
Miscellaneous
canSAR (ICR)NHLRC3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNHLRC3
EVEXNHLRC3
GoPubMedNHLRC3
iHOPNHLRC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:38 CEST 2017

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