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NHLRC4 (NHL repeat containing 4)

Identity

Other alias-
HGNC (Hugo) NHLRC4
LocusID (NCBI) 283948
Atlas_Id 70826
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 566995 and ends at 569495 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NHLRC4   26700
Cards
Entrez_Gene (NCBI)NHLRC4  283948  NHL repeat containing 4
Aliases
GeneCards (Weizmann)NHLRC4
Ensembl hg19 (Hinxton)ENSG00000257108 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257108 [Gene_View]  chr16:566995-569495 [Contig_View]  NHLRC4 [Vega]
ICGC DataPortalENSG00000257108
TCGA cBioPortalNHLRC4
AceView (NCBI)NHLRC4
Genatlas (Paris)NHLRC4
WikiGenes283948
SOURCE (Princeton)NHLRC4
Genetics Home Reference (NIH)NHLRC4
Genomic and cartography
GoldenPath hg38 (UCSC)NHLRC4  -     chr16:566995-569495 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NHLRC4  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblNHLRC4 - 16p13.3 [CytoView hg19]  NHLRC4 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBINHLRC4 [Mapview hg19]  NHLRC4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093527 BC032015 BC048340 BC113527 BC113529
RefSeq transcript (Entrez)NM_001301159 NM_176677
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NHLRC4
Cluster EST : UnigeneHs.744949 [ NCBI ]
CGAP (NCI)Hs.744949
Alternative Splicing GalleryENSG00000257108
Gene ExpressionNHLRC4 [ NCBI-GEO ]   NHLRC4 [ EBI - ARRAY_EXPRESS ]   NHLRC4 [ SEEK ]   NHLRC4 [ MEM ]
Gene Expression Viewer (FireBrowse)NHLRC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283948
GTEX Portal (Tissue expression)NHLRC4
Human Protein AtlasENSG00000257108-NHLRC4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG21
Splice isoforms : SwissVarP0CG21
PhosPhoSitePlusP0CG21
Domaine pattern : Prosite (Expaxy)NHL (PS51125)   
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    NHL_repeat    NHL_repeat_subgr   
Domain families : Pfam (Sanger)NHL (PF01436)   
Domain families : Pfam (NCBI)pfam01436   
Conserved Domain (NCBI)NHLRC4
DMDM Disease mutations283948
Blocks (Seattle)NHLRC4
SuperfamilyP0CG21
Human Protein Atlas [tissue]ENSG00000257108-NHLRC4 [tissue]
Peptide AtlasP0CG21
HPRD11681
IPIIPI00397942   
Protein Interaction databases
DIP (DOE-UCLA)P0CG21
IntAct (EBI)P0CG21
FunCoupENSG00000257108
BioGRIDNHLRC4
STRING (EMBL)NHLRC4
ZODIACNHLRC4
Ontologies - Pathways
QuickGOP0CG21
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNHLRC4
Atlas of Cancer Signalling NetworkNHLRC4
Wikipedia pathwaysNHLRC4
Orthology - Evolution
OrthoDB283948
GeneTree (enSembl)ENSG00000257108
Phylogenetic Trees/Animal Genes : TreeFamNHLRC4
HOVERGENP0CG21
HOGENOMP0CG21
Homologs : HomoloGeneNHLRC4
Homology/Alignments : Family Browser (UCSC)NHLRC4
Gene fusions - Rearrangements
Tumor Fusion PortalNHLRC4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNHLRC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NHLRC4
dbVarNHLRC4
ClinVarNHLRC4
1000_GenomesNHLRC4 
Exome Variant ServerNHLRC4
ExAC (Exome Aggregation Consortium)ENSG00000257108
GNOMAD BrowserENSG00000257108
Genetic variants : HAPMAP283948
Genomic Variants (DGV)NHLRC4 [DGVbeta]
DECIPHERNHLRC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNHLRC4 
Mutations
ICGC Data PortalNHLRC4 
TCGA Data PortalNHLRC4 
Broad Tumor PortalNHLRC4
OASIS PortalNHLRC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNHLRC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNHLRC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NHLRC4
DgiDB (Drug Gene Interaction Database)NHLRC4
DoCM (Curated mutations)NHLRC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NHLRC4 (select a term)
intoGenNHLRC4
Cancer3DNHLRC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNHLRC4
MedgenNHLRC4
Genetic Testing Registry NHLRC4
NextProtP0CG21 [Medical]
TSGene283948
GENETestsNHLRC4
Target ValidationNHLRC4
Huge Navigator NHLRC4 [HugePedia]
snp3D : Map Gene to Disease283948
BioCentury BCIQNHLRC4
ClinGenNHLRC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283948
Chemical/Pharm GKB GenePA165450302
Clinical trialNHLRC4
Miscellaneous
canSAR (ICR)NHLRC4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNHLRC4
EVEXNHLRC4
GoPubMedNHLRC4
iHOPNHLRC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:00 CET 2017

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