Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

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NHP2 (NHP2 ribonucleoprotein)


Other namesDKCB2
HGNC (Hugo) NHP2
LocusID (NCBI) 55651
Location 5q35.3
Location_base_pair Starts at 177576465 and ends at 177580961 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)NHP2   14377
Entrez_Gene (NCBI)NHP2  55651  NHP2 ribonucleoprotein
GeneCards (Weizmann)NHP2
Ensembl hg19 (Hinxton)ENSG00000145912 [Gene_View]  chr5:177576465-177580961 [Contig_View]  NHP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145912 [Gene_View]  chr5:177576465-177580961 [Contig_View]  NHP2 [Vega]
ICGC DataPortalENSG00000145912
AceView (NCBI)NHP2
Genatlas (Paris)NHP2
SOURCE (Princeton)NHP2
Genomic and cartography
GoldenPath hg19 (UCSC)NHP2  -     chr5:177576465-177580961 -  5q35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NHP2  -     5q35.3   [Description]    (hg38-Dec_2013)
EnsemblNHP2 - 5q35.3 [CytoView hg19]  NHP2 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBINHP2 [Mapview hg19]  NHP2 [Mapview hg38]
OMIM224230   606470   613987   
Gene and transcription
Genbank (Entrez)AF161404 AF401217 AF401219 AJ293309 AK000486
RefSeq transcript (Entrez)NM_001034833 NM_017838
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_011765 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)NHP2
Cluster EST : UnigeneHs.744074 [ NCBI ]
CGAP (NCI)Hs.744074
Alternative Splicing : Fast-db (Paris)GSHG0025312
Alternative Splicing GalleryENSG00000145912
Gene ExpressionNHP2 [ NCBI-GEO ]     NHP2 [ SEEK ]   NHP2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX24 (Uniprot)
NextProtQ9NX24  [Medical]
With graphics : InterProQ9NX24
Splice isoforms : SwissVarQ9NX24 (Swissvar)
Domains : Interpro (EBI)H/ACA_rnp_Nhp2_euk    L30e-like    Ribosomal_L7Ae/L30e/S12e/Gad45    Ribosomal_L7Ae/L8/Nhp2   
Related proteins : CluSTrQ9NX24
Domain families : Pfam (Sanger)Ribosomal_L7Ae (PF01248)   
Domain families : Pfam (NCBI)pfam01248   
DMDM Disease mutations55651
Blocks (Seattle)Q9NX24
Human Protein AtlasENSG00000145912
Peptide AtlasQ9NX24
IPIIPI00041325   IPI00654617   IPI00968276   IPI00966700   IPI00983095   
Protein Interaction databases
IntAct (EBI)Q9NX24
Ontologies - Pathways
Ontology : AmiGOprotein binding  nucleoplasm  nucleolus  small nucleolar ribonucleoprotein complex  cytoplasm  Cajal body  snoRNA binding  rRNA pseudouridine synthesis  poly(A) RNA binding  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleolus  small nucleolar ribonucleoprotein complex  cytoplasm  Cajal body  snoRNA binding  rRNA pseudouridine synthesis  poly(A) RNA binding  
Pathways : KEGGRibosome biogenesis in eukaryotes   
Protein Interaction DatabaseNHP2
DoCM (Curated mutations)NHP2
Wikipedia pathwaysNHP2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerNHP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NHP2
Exome Variant ServerNHP2
SNP (GeneSNP Utah)NHP2
Genetic variants : HAPMAPNHP2
Genomic Variants (DGV)NHP2 [DGVbeta]
ICGC Data PortalENSG00000145912 
Somatic Mutations in Cancer : COSMICNHP2 
CONAN: Copy Number AnalysisNHP2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)5:177576465-177580961
Mutations and Diseases : HGMDNHP2
OMIM224230    606470    613987   
NextProtQ9NX24 [Medical]
Disease Genetic AssociationNHP2
Huge Navigator NHP2 [HugePedia]  NHP2 [HugeCancerGEM]
snp3D : Map Gene to Disease55651
DGIdb (Drug Gene Interaction db)NHP2
General knowledge
Homologs : HomoloGeneNHP2
Homology/Alignments : Family Browser (UCSC)NHP2
Phylogenetic Trees/Animal Genes : TreeFamNHP2
Chemical/Protein Interactions : CTD55651
Chemical/Pharm GKB GenePA164723898
Clinical trialNHP2
Cancer Resource (Charite)ENSG00000145912
Other databases
PubMed42 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 16:40:41 CET 2015

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