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NHP2 (NHP2 ribonucleoprotein)

Identity

Other namesDKCB2
NHP2P
NOLA2
HGNC (Hugo) NHP2
LocusID (NCBI) 55651
Location 5q35.3
Location_base_pair Starts at 177576465 and ends at 177580961 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NHP2   14377
Cards
Entrez_Gene (NCBI)NHP2  55651  NHP2 ribonucleoprotein
GeneCards (Weizmann)NHP2
Ensembl (Hinxton)ENSG00000145912 [Gene_View]  chr5:177576465-177580961 [Contig_View]  NHP2 [Vega]
ICGC DataPortalENSG00000145912
cBioPortalNHP2
AceView (NCBI)NHP2
Genatlas (Paris)NHP2
WikiGenes55651
SOURCE (Princeton)NM_001034833 NM_017838
Genomic and cartography
GoldenPath (UCSC)NHP2  -  5q35.3   chr5:177576465-177580961 -  5q35.3   [Description]    (hg19-Feb_2009)
EnsemblNHP2 - 5q35.3 [CytoView]
Mapping of homologs : NCBINHP2 [Mapview]
OMIM606470   613987   
Gene and transcription
Genbank (Entrez)AF161404 AF401217 AF401219 AJ293309 AK000486
RefSeq transcript (Entrez)NM_001034833 NM_017838
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NG_011765 NT_023133 NW_001838967 NW_004929325
Consensus coding sequences : CCDS (NCBI)NHP2
Cluster EST : UnigeneHs.744074 [ NCBI ]
CGAP (NCI)Hs.744074
Alternative Splicing : Fast-db (Paris)GSHG0025312
Alternative Splicing GalleryENSG00000145912
Gene ExpressionNHP2 [ NCBI-GEO ]     NHP2 [ SEEK ]   NHP2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX24 (Uniprot)
NextProtQ9NX24  [Medical]
With graphics : InterProQ9NX24
Splice isoforms : SwissVarQ9NX24 (Swissvar)
Domains : Interpro (EBI)H/ACA_rnp_Nhp2_euk [organisation]   L30e-like [organisation]   Ribosomal_L7Ae/L30e/S12e/Gad45 [organisation]   Ribosomal_L7Ae/L8/Nhp2 [organisation]  
Related proteins : CluSTrQ9NX24
Domain families : Pfam (Sanger)Ribosomal_L7Ae (PF01248)   
Domain families : Pfam (NCBI)pfam01248   
DMDM Disease mutations55651
Blocks (Seattle)Q9NX24
Human Protein AtlasENSG00000145912 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9NX24
HPRD07570
IPIIPI00041325   IPI00654617   IPI00968276   IPI00966700   IPI00983095   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX24
IntAct (EBI)Q9NX24
FunCoupENSG00000145912
BioGRIDNHP2
InParanoidQ9NX24
Interologous Interaction database Q9NX24
IntegromeDBNHP2
STRING (EMBL)NHP2
Ontologies - Pathways
Ontology : AmiGOnucleus  nucleolus  small nucleolar ribonucleoprotein complex  cytoplasm  Cajal body  snoRNA binding  rRNA pseudouridine synthesis  poly(A) RNA binding  
Ontology : EGO-EBInucleus  nucleolus  small nucleolar ribonucleoprotein complex  cytoplasm  Cajal body  snoRNA binding  rRNA pseudouridine synthesis  poly(A) RNA binding  
Pathways : KEGGRibosome biogenesis in eukaryotes   
Protein Interaction DatabaseNHP2
Wikipedia pathwaysNHP2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NHP2
snp3D : Map Gene to Disease55651
SNP (GeneSNP Utah)NHP2
SNP : HGBaseNHP2
Genetic variants : HAPMAPNHP2
Exome VariantNHP2
1000_GenomesNHP2 
ICGC programENSG00000145912 
Somatic Mutations in Cancer : COSMICNHP2 
CONAN: Copy Number AnalysisNHP2 
Mutations and Diseases : HGMDNHP2
Mutations and Diseases : intOGenNHP2
Genomic VariantsNHP2  NHP2 [DGVbeta]
dbVarNHP2
ClinVarNHP2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM606470    613987   
MedgenNHP2
GENETestsNHP2
Disease Genetic AssociationNHP2
Huge Navigator NHP2 [HugePedia]  NHP2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneNHP2
Homology/Alignments : Family Browser (UCSC)NHP2
Phylogenetic Trees/Animal Genes : TreeFamNHP2
Chemical/Protein Interactions : CTD55651
Chemical/Pharm GKB GenePA164723898
Clinical trialNHP2
Cancer Resource (Charite)ENSG00000145912
Other databases
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
CoreMineNHP2
iHOPNHP2
OncoSearchNHP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:07:04 CEST 2014

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