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NHP2 (NHP2 ribonucleoprotein)

Identity

Other namesDKCB2
NHP2P
NOLA2
HGNC (Hugo) NHP2
LocusID (NCBI) 55651
Atlas_Id 50417
Location 5q35.3
Location_base_pair Starts at 177576465 and ends at 177580961 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NHP2   14377
Cards
Entrez_Gene (NCBI)NHP2  55651  NHP2 ribonucleoprotein
GeneCards (Weizmann)NHP2
Ensembl hg19 (Hinxton)ENSG00000145912 [Gene_View]  chr5:177576465-177580961 [Contig_View]  NHP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145912 [Gene_View]  chr5:177576465-177580961 [Contig_View]  NHP2 [Vega]
ICGC DataPortalENSG00000145912
TCGA cBioPortalNHP2
AceView (NCBI)NHP2
Genatlas (Paris)NHP2
WikiGenes55651
SOURCE (Princeton)NHP2
Genomic and cartography
GoldenPath hg19 (UCSC)NHP2  -     chr5:177576465-177580961 -  5q35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NHP2  -     5q35.3   [Description]    (hg38-Dec_2013)
EnsemblNHP2 - 5q35.3 [CytoView hg19]  NHP2 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBINHP2 [Mapview hg19]  NHP2 [Mapview hg38]
OMIM224230   606470   613987   
Gene and transcription
Genbank (Entrez)AF161404 AF401217 AF401219 AJ293309 AK000486
RefSeq transcript (Entrez)NM_001034833 NM_017838
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_011765 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)NHP2
Cluster EST : UnigeneHs.744074 [ NCBI ]
CGAP (NCI)Hs.744074
Alternative Splicing : Fast-db (Paris)GSHG0025312
Alternative Splicing GalleryENSG00000145912
Gene ExpressionNHP2 [ NCBI-GEO ]     NHP2 [ SEEK ]   NHP2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX24 (Uniprot)
NextProtQ9NX24  [Medical]
With graphics : InterProQ9NX24
Splice isoforms : SwissVarQ9NX24 (Swissvar)
Domains : Interpro (EBI)H/ACA_rnp_Nhp2_euk    L30e-like    Ribosomal_L7Ae/L30e/S12e/Gad45    Ribosomal_L7Ae/L8/Nhp2   
Related proteins : CluSTrQ9NX24
Domain families : Pfam (Sanger)Ribosomal_L7Ae (PF01248)   
Domain families : Pfam (NCBI)pfam01248   
DMDM Disease mutations55651
Blocks (Seattle)Q9NX24
Human Protein AtlasENSG00000145912
Peptide AtlasQ9NX24
HPRD07570
IPIIPI00041325   IPI00654617   IPI00968276   IPI00966700   IPI00983095   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX24
IntAct (EBI)Q9NX24
FunCoupENSG00000145912
BioGRIDNHP2
IntegromeDBNHP2
STRING (EMBL)NHP2
Ontologies - Pathways
QuickGOQ9NX24
Ontology : AmiGOprotein binding  nucleoplasm  nucleolus  small nucleolar ribonucleoprotein complex  cytoplasm  Cajal body  snoRNA binding  rRNA pseudouridine synthesis  poly(A) RNA binding  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleolus  small nucleolar ribonucleoprotein complex  cytoplasm  Cajal body  snoRNA binding  rRNA pseudouridine synthesis  poly(A) RNA binding  
Pathways : KEGGRibosome biogenesis in eukaryotes   
Protein Interaction DatabaseNHP2
DoCM (Curated mutations)NHP2
Wikipedia pathwaysNHP2
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerNHP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NHP2
dbVarNHP2
ClinVarNHP2
1000_GenomesNHP2 
Exome Variant ServerNHP2
SNP (GeneSNP Utah)NHP2
SNP : HGBaseNHP2
Genetic variants : HAPMAPNHP2
Genomic Variants (DGV)NHP2 [DGVbeta]
Mutations
ICGC Data PortalNHP2 
TCGA Data PortalNHP2 
Tumor PortalNHP2
Somatic Mutations in Cancer : COSMICNHP2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)5:177576465-177580961
CONAN: Copy Number AnalysisNHP2 
Mutations and Diseases : HGMDNHP2
OMIM224230    606470    613987   
MedgenNHP2
NextProtQ9NX24 [Medical]
GENETestsNHP2
Disease Genetic AssociationNHP2
Huge Navigator NHP2 [HugePedia]  NHP2 [HugeCancerGEM]
snp3D : Map Gene to Disease55651
DGIdb (Drug Gene Interaction db)NHP2
General knowledge
Homologs : HomoloGeneNHP2
Homology/Alignments : Family Browser (UCSC)NHP2
Phylogenetic Trees/Animal Genes : TreeFamNHP2
Chemical/Protein Interactions : CTD55651
Chemical/Pharm GKB GenePA164723898
Clinical trialNHP2
Cancer Resource (Charite)ENSG00000145912
Other databases
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
CoreMineNHP2
GoPubMedNHP2
iHOPNHP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 20 19:45:29 CEST 2015

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