Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NHSL1 (NHS like 1)

Identity

Alias_namesC6orf63
chromosome 6 open reading frame 63
Alias_symbol (synonym)bA43P8.1
KIAA1357
Other alias
HGNC (Hugo) NHSL1
LocusID (NCBI) 57224
Atlas_Id 70829
Location 6q24.1  [Link to chromosome band 6q24]
Location_base_pair Starts at 138422044 and ends at 138499442 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NHSL1 (6q23.3) / EMILIN1 (2p23.3)NHSL1 (6q23.3) / FTL (19q13.33)NHSL1 (6q23.3) / VTA1 (6q24.1)
NKIRAS1 (3p24.2) / NHSL1 (6q23.3)PTPRK (6q22.33) / NHSL1 (6q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NHSL1   21021
Cards
Entrez_Gene (NCBI)NHSL1  57224  NHS like 1
AliasesC6orf63
GeneCards (Weizmann)NHSL1
Ensembl hg19 (Hinxton)ENSG00000135540 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135540 [Gene_View]  chr6:138422044-138499442 [Contig_View]  NHSL1 [Vega]
ICGC DataPortalENSG00000135540
TCGA cBioPortalNHSL1
AceView (NCBI)NHSL1
Genatlas (Paris)NHSL1
WikiGenes57224
SOURCE (Princeton)NHSL1
Genetics Home Reference (NIH)NHSL1
Genomic and cartography
GoldenPath hg38 (UCSC)NHSL1  -     Ľa hr%f=jttp://genome-euro.ucsc.edu/cgi-bin/hgTracks?position=chr6:138422044-138499442&pix=840&Submit=Submit&db=hg38 TARGET=GoldenPath>chr6:138422044-138499442 -  6q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NHSL1  -     6q24.1   [Description]    (hg19-Feb_2009)
EnsemblNHSL1 - 6q24.1 [CytoView hg19]  NHSL1 - 6q24.1 [CytoView hg38]
Mapping of homologs : NCBINHSL1 [Mapview hg19]  NHSL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037778 AK000699 AK025199 AK025347 AK299585
RefSeq transcript (Entrez)NM_001144060 NM_020464
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NHSL1
Cluster EST : UnigeneHs.652741 [ NCBI ]
CGAP (NCI)Hs.652741
Alternative Splicing GalleryENSG00000135540
Gene ExpressionNHSL1 [ NCBI-GEO ]   NHSL1 [ EBI - ARRAY_EXPRESS ]   NHSL1 [ SEEK ]   NHSL1 [ MEM ]
Gene Expression Viewer (FireBrowse)NHSL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57224
GTEX Portal (Tissue expression)NHSL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SYE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SYE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SYE7
Splice isoforms : SwissVarQ5SYE7
PhosPhoSitePlusQ5SYE7
Domains : Interpro (EBI)NHS_fam   
Domain families : Pfam (Sanger)NHS (PF15273)   
Domain families : Pfam (NCBI)pfam15273   
Conserved Domain (NCBI)NHSL1
DMDM Disease mutations57224
Blocks (Seattle)NHSL1
SuperfamilyQ5SYE7
Human Protein AtlasENSG00000135540
Peptide AtlasQ5SYE7
IPIIPI00455733   IPI00414367   IPI00974111   IPI00977074   IPI00985449   
Protein Interaction databases
DIP (DOE-UCLA)Q5SYE7
IntAct (EBI)Q5SYE7
FunCoupENSG00000135540
BioGRIDNHSL1
STRING (EMBL)NHSL1
ZODIACNHSL1
Ontologies - Pathways
QuickGOQ5SYE7
Ontology : AmiGOmembrane  motor neuron migration  
Ontology : EGO-EBImembrane  motor neuron migration  
NDEx NetworkNHSL1
Atlas of Cancer Signalling NetworkNHSL1
Wikipedia pathwaysNHSL1
Orthology - Evolution
OrthoDB57224
GeneTree (enSembl)ENSG00000135540
Phylogenetic Trees/Animal Genes : TreeFamNHSL1
HOVERGENQ5SYE7
HOGENOMQ5SYE7
Homologs : HomoloGeneNHSL1
Homology/Alignments : Family Browser (UCSC)NHSL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNHSL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NHSL1
dbVarNHSL1
ClinVarNHSL1
1000_GenomesNHSL1 
Exome Variant ServerNHSL1
ExAC (Exome Aggregation Consortium)NHSL1 (select the gene name)
Genetic variants : HAPMAP57224
Genomic Variants (DGV)NHSL1 [DGVbeta]
DECIPHERNHSL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNHSL1 
Mutations
ICGC Data PortalNHSL1 
TCGA Data PortalNHSL1 
Broad Tumor PortalNHSL1
OASIS PortalNHSL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNHSL1&n"sp;&Nbsq;[overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNHSL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NHSL1
DgiDB (Drug Gene Interaction Database)NHSL1
DoCM (Curated mutations)NHSL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NHSL1 (select a term)
intoGenNHSL1
Cancer3DNHSL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNHSL1
Genetic Testing Registry NHSL1
NextProtQ5SYE7 [Medical]
TSGene57224
GENETestsNHSL1
Target ValidationNHSL1
Huge Navigator NHSL1 [HugePedia]
snp3D : Map Gene to Disease57224
BioCentury BCIQNHSL1
ClinGenNHSL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57224
Chemical/Pharm GKB GenePA134929320
Clinical trialNHSL1
Miscellaneous
canSAR (ICR)NHSL1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNHSL1
EVEXNHSL1
GoPubMedNHSL1
iHOPNHSL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:32:01 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.