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NIBAN1 (niban apoptosis regulator 1)

Identity

Alias (NCBI)C1orf24
FAM129A
GIG39
NIBAN
HGNC (Hugo) NIBAN1
HGNC Alias symbNIBAN
GIG39
HGNC Alias namecell growth inhibiting protein 39
HGNC Previous nameC1orf24
 FAM129A
HGNC Previous namechromosome 1 open reading frame 24
 family with sequence similarity 129 member A
LocusID (NCBI) 116496
Atlas_Id 871
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 184791032 and ends at 184974508 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)NIBAN1   16784
Cards
Entrez_Gene (NCBI)NIBAN1    niban apoptosis regulator 1
AliasesC1orf24; FAM129A; GIG39; NIBAN
GeneCards (Weizmann)NIBAN1
Ensembl hg19 (Hinxton)ENSG00000135842 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135842 [Gene_View]  ENSG00000135842 [Sequence]  chr1:184791032-184974508 [Contig_View]  NIBAN1 [Vega]
ICGC DataPortalENSG00000135842
TCGA cBioPortalNIBAN1
AceView (NCBI)NIBAN1
Genatlas (Paris)NIBAN1
SOURCE (Princeton)NIBAN1
Genetics Home Reference (NIH)NIBAN1
Genomic and cartography
GoldenPath hg38 (UCSC)NIBAN1  -     chr1:184791032-184974508 -  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NIBAN1  -     -   [Description]    (hg19-Feb_2009)
GoldenPathNIBAN1 - - [CytoView hg19]  NIBAN1 - - [CytoView hg38]
ImmunoBaseENSG00000135842
genome Data Viewer NCBINIBAN1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB050477 AF288391 AK022527 AK074139 AK095547
RefSeq transcript (Entrez)NM_052966
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIBAN1
Alternative Splicing GalleryENSG00000135842
Gene ExpressionNIBAN1 [ NCBI-GEO ]   NIBAN1 [ EBI - ARRAY_EXPRESS ]   NIBAN1 [ SEEK ]   NIBAN1 [ MEM ]
Gene Expression Viewer (FireBrowse)NIBAN1 [ Firebrowse - Broad ]
GenevisibleExpression of NIBAN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116496
GTEX Portal (Tissue expression)NIBAN1
Human Protein AtlasENSG00000135842-NIBAN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZQ8
Splice isoforms : SwissVarQ9BZQ8
PhosPhoSitePlusQ9BZQ8
Domains : Interpro (EBI)Niban-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NIBAN1
Blocks (Seattle)NIBAN1
SuperfamilyQ9BZQ8
Human Protein Atlas [tissue]ENSG00000135842-NIBAN1 [tissue]
Peptide AtlasQ9BZQ8
HPRD10725
IPIIPI00328350   IPI00647836   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZQ8
IntAct (EBI)Q9BZQ8
BioGRIDNIBAN1
STRING (EMBL)NIBAN1
ZODIACNIBAN1
Ontologies - Pathways
QuickGOQ9BZQ8
Ontology : AmiGOnegative regulation of protein phosphorylation  positive regulation of protein phosphorylation  molecular_function  protein binding  cytoplasm  cytosol  plasma membrane  membrane  response to endoplasmic reticulum stress  positive regulation of translation  extracellular exosome  
Ontology : EGO-EBInegative regulation of protein phosphorylation  positive regulation of protein phosphorylation  molecular_function  protein binding  cytoplasm  cytosol  plasma membrane  membrane  response to endoplasmic reticulum stress  positive regulation of translation  extracellular exosome  
NDEx NetworkNIBAN1
Atlas of Cancer Signalling NetworkNIBAN1
Wikipedia pathwaysNIBAN1
Orthology - Evolution
OrthoDB116496
GeneTree (enSembl)ENSG00000135842
Phylogenetic Trees/Animal Genes : TreeFamNIBAN1
HOGENOMQ9BZQ8
Homologs : HomoloGeneNIBAN1
Homology/Alignments : Family Browser (UCSC)NIBAN1
Gene fusions - Rearrangements
Fusion : QuiverNIBAN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIBAN1 [hg38]
dbVarNIBAN1
ClinVarNIBAN1
MonarchNIBAN1
1000_GenomesNIBAN1 
Exome Variant ServerNIBAN1
GNOMAD BrowserENSG00000135842
Varsome BrowserNIBAN1
Genomic Variants (DGV)NIBAN1 [DGVbeta]
DECIPHERNIBAN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNIBAN1 
Mutations
ICGC Data PortalNIBAN1 
TCGA Data PortalNIBAN1 
Broad Tumor PortalNIBAN1
OASIS PortalNIBAN1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNIBAN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NIBAN1
DgiDB (Drug Gene Interaction Database)NIBAN1
DoCM (Curated mutations)NIBAN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIBAN1 (select a term)
intoGenNIBAN1
Cancer3DNIBAN1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNIBAN1
MedgenNIBAN1
Genetic Testing Registry NIBAN1
NextProtQ9BZQ8 [Medical]
GENETestsNIBAN1
Target ValidationNIBAN1
Huge Navigator NIBAN1 [HugePedia]
ClinGenNIBAN1
Clinical trials, drugs, therapy
MyCancerGenomeNIBAN1
Protein Interactions : CTD
Pharm GKB GenePA162385951
PharosQ9BZQ8
Clinical trialNIBAN1
Miscellaneous
canSAR (ICR)NIBAN1 (select the gene name)
HarmonizomeNIBAN1
DataMed IndexNIBAN1
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNIBAN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:28:54 CET 2021

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