Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NIBAN1 (niban apoptosis regulator 1)

Identity

Alias_namesC1orf24
chromosome 1 open reading frame 24
family with sequence similarity 129, member A
Alias_symbol (synonym)NIBAN
GIG39
Other aliasFAM129A
HGNC (Hugo) NIBAN1
LocusID (NCBI) 116496
Atlas_Id 871
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 184791025 and ends at 184974586 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NIBAN1   16784
Cards
Entrez_Gene (NCBI)NIBAN1  116496  niban apoptosis regulator 1
AliasesC1orf24; FAM129A; GIG39; NIBAN
GeneCards (Weizmann)NIBAN1
Ensembl hg19 (Hinxton)ENSG00000135842 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135842 [Gene_View]  ENSG00000135842 [Sequence]  chr1:184791025-184974586 [Contig_View]  NIBAN1 [Vega]
ICGC DataPortalENSG00000135842
TCGA cBioPortalNIBAN1
AceView (NCBI)NIBAN1
Genatlas (Paris)NIBAN1
WikiGenes116496
SOURCE (Princeton)NIBAN1
Genetics Home Reference (NIH)NIBAN1
Genomic and cartography
GoldenPath hg38 (UCSC)NIBAN1  -     chr1:184791025-184974586 -  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NIBAN1  -     -   [Description]    (hg19-Feb_2009)
GoldenPathNIBAN1 - - [CytoView hg19]  NIBAN1 - - [CytoView hg38]
ImmunoBaseENSG00000135842
Mapping of homologs : NCBINIBAN1 [Mapview hg19]  NIBAN1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB050477 AF288391 AK022527 AK074139 AK095547
RefSeq transcript (Entrez)NM_052966
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIBAN1
Cluster EST : UnigeneHs.518662 [ NCBI ]
CGAP (NCI)Hs.518662
Alternative Splicing GalleryENSG00000135842
Gene ExpressionNIBAN1 [ NCBI-GEO ]   NIBAN1 [ EBI - ARRAY_EXPRESS ]   NIBAN1 [ SEEK ]   NIBAN1 [ MEM ]
Gene Expression Viewer (FireBrowse)NIBAN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116496
GTEX Portal (Tissue expression)NIBAN1
Human Protein AtlasENSG00000135842-NIBAN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZQ8
Splice isoforms : SwissVarQ9BZQ8
PhosPhoSitePlusQ9BZQ8
Domains : Interpro (EBI)Niban-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NIBAN1
DMDM Disease mutations116496
Blocks (Seattle)NIBAN1
SuperfamilyQ9BZQ8
Human Protein Atlas [tissue]ENSG00000135842-NIBAN1 [tissue]
Peptide AtlasQ9BZQ8
HPRD10725
IPIIPI00328350   IPI00647836   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZQ8
IntAct (EBI)Q9BZQ8
FunCoupENSG00000135842
BioGRIDNIBAN1
STRING (EMBL)NIBAN1
ZODIACNIBAN1
Ontologies - Pathways
QuickGOQ9BZQ8
Ontology : AmiGOnegative regulation of protein phosphorylation  positive regulation of protein phosphorylation  molecular_function  protein binding  cytoplasm  cytosol  plasma membrane  membrane  response to endoplasmic reticulum stress  positive regulation of translation  extracellular exosome  
Ontology : EGO-EBInegative regulation of protein phosphorylation  positive regulation of protein phosphorylation  molecular_function  protein binding  cytoplasm  cytosol  plasma membrane  membrane  response to endoplasmic reticulum stress  positive regulation of translation  extracellular exosome  
NDEx NetworkNIBAN1
Atlas of Cancer Signalling NetworkNIBAN1
Wikipedia pathwaysNIBAN1
Orthology - Evolution
OrthoDB116496
GeneTree (enSembl)ENSG00000135842
Phylogenetic Trees/Animal Genes : TreeFamNIBAN1
HOGENOMQ9BZQ8
Homologs : HomoloGeneNIBAN1
Homology/Alignments : Family Browser (UCSC)NIBAN1
Gene fusions - Rearrangements
Fusion : QuiverNIBAN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIBAN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIBAN1
dbVarNIBAN1
ClinVarNIBAN1
1000_GenomesNIBAN1 
Exome Variant ServerNIBAN1
ExAC (Exome Aggregation Consortium)ENSG00000135842
GNOMAD BrowserENSG00000135842
Varsome BrowserNIBAN1
Genetic variants : HAPMAP116496
Genomic Variants (DGV)NIBAN1 [DGVbeta]
DECIPHERNIBAN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNIBAN1 
Mutations
ICGC Data PortalNIBAN1 
TCGA Data PortalNIBAN1 
Broad Tumor PortalNIBAN1
OASIS PortalNIBAN1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNIBAN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NIBAN1
DgiDB (Drug Gene Interaction Database)NIBAN1
DoCM (Curated mutations)NIBAN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIBAN1 (select a term)
intoGenNIBAN1
Cancer3DNIBAN1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNIBAN1
MedgenNIBAN1
Genetic Testing Registry NIBAN1
NextProtQ9BZQ8 [Medical]
TSGene116496
GENETestsNIBAN1
Target ValidationNIBAN1
Huge Navigator NIBAN1 [HugePedia]
snp3D : Map Gene to Disease116496
BioCentury BCIQNIBAN1
ClinGenNIBAN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116496
Chemical/Pharm GKB GenePA162385951
Clinical trialNIBAN1
Miscellaneous
canSAR (ICR)NIBAN1 (select the gene name)
DataMed IndexNIBAN1
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIBAN1
EVEXNIBAN1
GoPubMedNIBAN1
iHOPNIBAN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 12 15:47:03 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.