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NIBAN3 (niban apoptosis regulator 3)

Identity

Alias (NCBI)BCNP1
FAM129C
HGNC (Hugo) NIBAN3
HGNC Alias symbFLJ39802
BCNP1
HGNC Previous namefamily with sequence similarity 129, member C
LocusID (NCBI) 199786
Atlas_Id 63015
Location 19p13.11  [Link to chromosome band 19p13]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 4 ]
  t(15;19)(q21;p13) COPS2/FAM129C
t(15;19)(q21;p13) FAM129C/COPS2
t(15;19)(q21;p13) COPS2/FAM129C
t(15;19)(q21;p13) FAM129C/COPS2



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(17;19)(q23;p13) CLTC/FAM129C


External links

Nomenclature
HGNC (Hugo)NIBAN3   24130
Cards
Entrez_Gene (NCBI)NIBAN3  199786  niban apoptosis regulator 3
AliasesBCNP1; FAM129C
GeneCards (Weizmann)NIBAN3
Ensembl hg19 (Hinxton)ENSG00000167483 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167483 [Gene_View]  ENSG00000167483 [Sequence]  - [Contig_View]  NIBAN3 [Vega]
ICGC DataPortalENSG00000167483
TCGA cBioPortalNIBAN3
AceView (NCBI)NIBAN3
Genatlas (Paris)NIBAN3
WikiGenes199786
SOURCE (Princeton)NIBAN3
Genetics Home Reference (NIH)NIBAN3
Genomic and cartography
GoldenPath hg38 (UCSC)NIBAN3  -  
GoldenPath hg19 (UCSC)NIBAN3  -  
GoldenPathNIBAN3 - [CytoView hg19]  NIBAN3 - [CytoView hg38]
ImmunoBaseENSG00000167483
genome Data Viewer NCBINIBAN3 [Mapview hg19]  
OMIM609967   
Gene and transcription
Genbank (Entrez)AA649002 AI688885 AK074069 AK097121 AK298062
RefSeq transcript (Entrez)NM_001098524 NM_001321826 NM_001321827 NM_001321828 NM_001363609 NM_173544
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIBAN3
Alternative Splicing GalleryENSG00000167483
Gene ExpressionNIBAN3 [ NCBI-GEO ]   NIBAN3 [ EBI - ARRAY_EXPRESS ]   NIBAN3 [ SEEK ]   NIBAN3 [ MEM ]
Gene Expression Viewer (FireBrowse)NIBAN3 [ Firebrowse - Broad ]
GenevisibleExpression of NIBAN3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199786
GTEX Portal (Tissue expression)NIBAN3
Human Protein AtlasENSG00000167483-NIBAN3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XR2
Splice isoforms : SwissVarQ86XR2
PhosPhoSitePlusQ86XR2
Domains : Interpro (EBI)Niban-like    PH-like_dom_sf    PH_domain   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PH (SM00233)  
Conserved Domain (NCBI)NIBAN3
DMDM Disease mutations199786
Blocks (Seattle)NIBAN3
SuperfamilyQ86XR2
Human Protein Atlas [tissue]ENSG00000167483-NIBAN3 [tissue]
Peptide AtlasQ86XR2
HPRD16546
IPIIPI00329276   IPI00384585   IPI00384584   IPI00385414   IPI00332604   IPI01014947   IPI00910218   IPI00953399   
Protein Interaction databases
DIP (DOE-UCLA)Q86XR2
IntAct (EBI)Q86XR2
FunCoupENSG00000167483
BioGRIDNIBAN3
STRING (EMBL)NIBAN3
ZODIACNIBAN3
Ontologies - Pathways
QuickGOQ86XR2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNIBAN3
Atlas of Cancer Signalling NetworkNIBAN3
Wikipedia pathwaysNIBAN3
Orthology - Evolution
OrthoDB199786
GeneTree (enSembl)ENSG00000167483
Phylogenetic Trees/Animal Genes : TreeFamNIBAN3
HOGENOMQ86XR2
Homologs : HomoloGeneNIBAN3
Homology/Alignments : Family Browser (UCSC)NIBAN3
Gene fusions - Rearrangements
Fusion : QuiverNIBAN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIBAN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIBAN3
dbVarNIBAN3
ClinVarNIBAN3
1000_GenomesNIBAN3 
Exome Variant ServerNIBAN3
GNOMAD BrowserENSG00000167483
Varsome BrowserNIBAN3
Genetic variants : HAPMAP199786
Genomic Variants (DGV)NIBAN3 [DGVbeta]
DECIPHERNIBAN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNIBAN3 
Mutations
ICGC Data PortalNIBAN3 
TCGA Data PortalNIBAN3 
Broad Tumor PortalNIBAN3
OASIS PortalNIBAN3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNIBAN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NIBAN3
DgiDB (Drug Gene Interaction Database)NIBAN3
DoCM (Curated mutations)NIBAN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIBAN3 (select a term)
intoGenNIBAN3
Cancer3DNIBAN3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609967   
Orphanet
DisGeNETNIBAN3
MedgenNIBAN3
Genetic Testing Registry NIBAN3
NextProtQ86XR2 [Medical]
TSGene199786
GENETestsNIBAN3
Target ValidationNIBAN3
Huge Navigator NIBAN3 [HugePedia]
snp3D : Map Gene to Disease199786
BioCentury BCIQNIBAN3
ClinGenNIBAN3
Clinical trials, drugs, therapy
Protein Interactions : CTD199786
Pharm GKB GenePA162386017
Clinical trialNIBAN3
Miscellaneous
canSAR (ICR)NIBAN3 (select the gene name)
HarmonizomeNIBAN3
DataMed IndexNIBAN3
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIBAN3
EVEXNIBAN3
GoPubMedNIBAN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:04:09 CEST 2020

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