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NICN1 (nicolin 1)

Identity

Alias_symbol (synonym)MGC12936
Other alias-
HGNC (Hugo) NICN1
LocusID (NCBI) 84276
Atlas_Id 54502
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49422333 and ends at 49429324 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COLQ (3p25.1) / NICN1 (3p21.31)COMT (22q11.21) / NICN1 (3p21.31)RASA2 (3q23) / NICN1 (3p21.31)
RHOA (3p21.31) / NICN1 (3p21.31)RHOA 3p21.31 / NICN1 3p21.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)NICN1   18317
Cards
Entrez_Gene (NCBI)NICN1  84276  nicolin 1
Aliases
GeneCards (Weizmann)NICN1
Ensembl hg19 (Hinxton)ENSG00000145029 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145029 [Gene_View]  chr3:49422333-49429324 [Contig_View]  NICN1 [Vega]
ICGC DataPortalENSG00000145029
TCGA cBioPortalNICN1
AceView (NCBI)NICN1
Genatlas (Paris)NICN1
WikiGenes84276
SOURCE (Princeton)NICN1
Genetics Home Reference (NIH)NICN1
Genomic and cartography
GoldenPath hg38 (UCSC)NICN1  -     chr3:49422333-49429324 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NICN1  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblNICN1 - 3p21.31 [CytoView hg19]  NICN1 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBINICN1 [Mapview hg19]  NICN1 [Mapview hg38]
OMIM611516   
Gene and transcription
Genbank (Entrez)AF538150 AJ299740 AK094248 AK301846 AK313073
RefSeq transcript (Entrez)NM_032316
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NICN1
Cluster EST : UnigeneHs.191460 [ NCBI ]
CGAP (NCI)Hs.191460
Alternative Splicing GalleryENSG00000145029
Gene ExpressionNICN1 [ NCBI-GEO ]   NICN1 [ EBI - ARRAY_EXPRESS ]   NICN1 [ SEEK ]   NICN1 [ MEM ]
Gene Expression Viewer (FireBrowse)NICN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84276
GTEX Portal (Tissue expression)NICN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSH3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSH3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSH3
Splice isoforms : SwissVarQ9BSH3
PhosPhoSitePlusQ9BSH3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NICN1
DMDM Disease mutations84276
Blocks (Seattle)NICN1
SuperfamilyQ9BSH3
Human Protein AtlasENSG00000145029
Peptide AtlasQ9BSH3
HPRD17631
IPIIPI00031134   IPI00456788   IPI00909285   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSH3
IntAct (EBI)Q9BSH3
FunCoupENSG00000145029
BioGRIDNICN1
STRING (EMBL)NICN1
ZODIACNICN1
Ontologies - Pathways
QuickGOQ9BSH3
Ontology : AmiGOnucleoplasm  microtubule  
Ontology : EGO-EBInucleoplasm  microtubule  
NDEx NetworkNICN1
Atlas of Cancer Signalling NetworkNICN1
Wikipedia pathwaysNICN1
Orthology - Evolution
OrthoDB84276
GeneTree (enSembl)ENSG00000145029
Phylogenetic Trees/Animal Genes : TreeFamNICN1
HOVERGENQ9BSH3
HOGENOMQ9BSH3
Homologs : HomoloGeneNICN1
Homology/Alignments : Family Browser (UCSC)NICN1
Gene fusions - Rearrangements
Fusion : MitelmanRASA2/NICN1 [3q23/3p21.31]  [t(3;3)(p21;q23)]  
Fusion : MitelmanRHOA/NICN1 [3p21.31/3p21.31]  [t(3;3)(p21;p21)]  
Fusion: TCGARHOA 3p21.31 NICN1 3p21.31 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNICN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NICN1
dbVarNICN1
ClinVarNICN1
1000_GenomesNICN1 
Exome Variant ServerNICN1
ExAC (Exome Aggregation Consortium)NICN1 (select the gene name)
Genetic variants : HAPMAP84276
Genomic Variants (DGV)NICN1 [DGVbeta]
DECIPHERNICN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNICN1 
Mutations
ICGC Data PortalNICN1 
TCGA Data PortalNICN1 
Broad Tumor PortalNICN1
OASIS PortalNICN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNICN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNICN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NICN1
DgiDB (Drug Gene Interaction Database)NICN1
DoCM (Curated mutations)NICN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NICN1 (select a term)
intoGenNICN1
Cancer3DNICN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611516   
Orphanet
MedgenNICN1
Genetic Testing Registry NICN1
NextProtQ9BSH3 [Medical]
TSGene84276
GENETestsNICN1
Target ValidationNICN1
Huge Navigator NICN1 [HugePedia]
snp3D : Map Gene to Disease84276
BioCentury BCIQNICN1
ClinGenNICN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84276
Chemical/Pharm GKB GenePA31623
Clinical trialNICN1
Miscellaneous
canSAR (ICR)NICN1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNICN1
EVEXNICN1
GoPubMedNICN1
iHOPNICN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:01:37 CEST 2017

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