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NID1 (nidogen 1)

Identity

Alias_namesNID
nidogen (enactin)
Alias_symbol (synonym)entactin
Other alias
HGNC (Hugo) NID1
LocusID (NCBI) 4811
Atlas_Id 47530
Location 1q42.3  [Link to chromosome band 1q42]
Location_base_pair Starts at 236139132 and ends at 236228481 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ETV6 (12p13.2) / NID1 (1q42.3)LYST (1q42.3) / NID1 (1q42.3)NID1 (1q42.3) / FAM92A1 (8q22.1)
NID1 (1q42.3) / HADHA (2p23.3)NID1 (1q42.3) / NID1 (1q42.3)NID1 (1q42.3) / SQRDL (15q21.1)
SQRDL (15q21.1) / NID1 (1q42.3)LYST 1q42.3 / NID1 1q42.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NID1   7821
Cards
Entrez_Gene (NCBI)NID1  4811  nidogen 1
AliasesNID
GeneCards (Weizmann)NID1
Ensembl hg19 (Hinxton)ENSG00000116962 [Gene_View]  chr1:236139132-236228481 [Contig_View]  NID1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000116962 [Gene_View]  chr1:236139132-236228481 [Contig_View]  NID1 [Vega]
ICGC DataPortalENSG00000116962
TCGA cBioPortalNID1
AceView (NCBI)NID1
Genatlas (Paris)NID1
WikiGenes4811
SOURCE (Princeton)NID1
Genetics Home Reference (NIH)NID1
Genomic and cartography
GoldenPath hg19 (UCSC)NID1  -     chr1:236139132-236228481 -  1q42.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NID1  -     1q42.3   [Description]    (hg38-Dec_2013)
EnsemblNID1 - 1q42.3 [CytoView hg19]  NID1 - 1q42.3 [CytoView hg38]
Mapping of homologs : NCBINID1 [Mapview hg19]  NID1 [Mapview hg38]
OMIM131390   
Gene and transcription
Genbank (Entrez)AB209448 AK297234 BC012501 BC045606 BQ549657
RefSeq transcript (Entrez)NM_002508
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_033228 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)NID1
Cluster EST : UnigeneHs.356624 [ NCBI ]
CGAP (NCI)Hs.356624
Alternative Splicing GalleryENSG00000116962
Gene ExpressionNID1 [ NCBI-GEO ]   NID1 [ EBI - ARRAY_EXPRESS ]   NID1 [ SEEK ]   NID1 [ MEM ]
Gene Expression Viewer (FireBrowse)NID1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4811
GTEX Portal (Tissue expression)NID1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP14543   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP14543  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP14543
Splice isoforms : SwissVarP14543
PhosPhoSitePlusP14543
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    LDLRB (PS51120)    NIDO (PS51220)    NIDOGEN_G2 (PS50993)    THYROGLOBULIN_1_1 (PS00484)    THYROGLOBULIN_1_2 (PS51162)   
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    cEGF    EGF-like_Ca-bd_dom    EGF-like_CS    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    EGF_dom    G2_nidogen/fibulin_G2F    GFP    GFP-like    Growth_fac_rcpt_    LDLR_classB_rpt    NIDO_dom    Thyroglobulin_1   
Domain families : Pfam (Sanger)cEGF (PF12662)    EGF_3 (PF12947)    EGF_CA (PF07645)    G2F (PF07474)    Ldl_recept_b (PF00058)    NIDO (PF06119)    Thyroglobulin_1 (PF00086)   
Domain families : Pfam (NCBI)pfam12662    pfam12947    pfam07645    pfam07474    pfam00058    pfam06119    pfam00086   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  G2F (SM00682)  LY (SM00135)  NIDO (SM00539)  TY (SM00211)  
Conserved Domain (NCBI)NID1
DMDM Disease mutations4811
Blocks (Seattle)NID1
PDB (SRS)1NDX   
PDB (PDBSum)1NDX   
PDB (IMB)1NDX   
PDB (RSDB)1NDX   
Structural Biology KnowledgeBase1NDX   
SCOP (Structural Classification of Proteins)1NDX   
CATH (Classification of proteins structures)1NDX   
SuperfamilyP14543
Human Protein AtlasENSG00000116962
Peptide AtlasP14543
HPRD00574
IPIIPI00026944   IPI00384542   IPI01026115   
Protein Interaction databases
DIP (DOE-UCLA)P14543
IntAct (EBI)P14543
FunCoupENSG00000116962
BioGRIDNID1
STRING (EMBL)NID1
ZODIACNID1
Ontologies - Pathways
QuickGOP14543
Ontology : AmiGOcalcium ion binding  collagen binding  extracellular region  basement membrane  basal lamina  cell-matrix adhesion  positive regulation of cell-substrate adhesion  extracellular matrix disassembly  extracellular matrix organization  extracellular matrix  extracellular matrix  extracellular matrix  glomerular basement membrane development  laminin binding  laminin-1 binding  proteoglycan binding  extracellular exosome  basement membrane organization  cell periphery  
Ontology : EGO-EBIcalcium ion binding  collagen binding  extracellular region  basement membrane  basal lamina  cell-matrix adhesion  positive regulation of cell-substrate adhesion  extracellular matrix disassembly  extracellular matrix organization  extracellular matrix  extracellular matrix  extracellular matrix  glomerular basement membrane development  laminin binding  laminin-1 binding  proteoglycan binding  extracellular exosome  basement membrane organization  cell periphery  
NDEx NetworkNID1
Atlas of Cancer Signalling NetworkNID1
Wikipedia pathwaysNID1
Orthology - Evolution
OrthoDB4811
GeneTree (enSembl)ENSG00000116962
Phylogenetic Trees/Animal Genes : TreeFamNID1
HOVERGENP14543
HOGENOMP14543
Homologs : HomoloGeneNID1
Homology/Alignments : Family Browser (UCSC)NID1
Gene fusions - Rearrangements
Fusion : MitelmanLYST/NID1 [1q42.3/1q42.3]  [t(1;1)(q42;q42)]  
Fusion: TCGALYST 1q42.3 NID1 1q42.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNID1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NID1
dbVarNID1
ClinVarNID1
1000_GenomesNID1 
Exome Variant ServerNID1
ExAC (Exome Aggregation Consortium)NID1 (select the gene name)
Genetic variants : HAPMAP4811
Genomic Variants (DGV)NID1 [DGVbeta]
DECIPHER (Syndromes)1:236139132-236228481  ENSG00000116962
CONAN: Copy Number AnalysisNID1 
Mutations
ICGC Data PortalNID1 
TCGA Data PortalNID1 
Broad Tumor PortalNID1
OASIS PortalNID1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNID1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNID1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch NID1
DgiDB (Drug Gene Interaction Database)NID1
DoCM (Curated mutations)NID1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NID1 (select a term)
intoGenNID1
Cancer3DNID1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM131390   
Orphanet
MedgenNID1
Genetic Testing Registry NID1
NextProtP14543 [Medical]
TSGene4811
GENETestsNID1
Huge Navigator NID1 [HugePedia]
snp3D : Map Gene to Disease4811
BioCentury BCIQNID1
ClinGenNID1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4811
Chemical/Pharm GKB GenePA31625
Clinical trialNID1
Miscellaneous
canSAR (ICR)NID1 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNID1
EVEXNID1
GoPubMedNID1
iHOPNID1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:18:50 CET 2017

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