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NIF3L1 (NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae))

Identity

Alias_namesALS2CR1
NIF3 (Ngg1 interacting factor 3, S.pombe homolog)-like 1
NIF3 NGG1 interacting factor 3-like 1 (S. pombe)
NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)
NIF3 NGG1 interacting factor 3-like 1
Alias_symbol (synonym)CALS-7
MDS015
Other alias
HGNC (Hugo) NIF3L1
LocusID (NCBI) 60491
Atlas_Id 70831
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 201754050 and ends at 201768655 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NIF3L1   13390
Cards
Entrez_Gene (NCBI)NIF3L1  60491  NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)
AliasesALS2CR1; CALS-7; MDS015
GeneCards (Weizmann)NIF3L1
Ensembl hg19 (Hinxton)ENSG00000196290 [Gene_View]  chr2:201754050-201768655 [Contig_View]  NIF3L1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196290 [Gene_View]  chr2:201754050-201768655 [Contig_View]  NIF3L1 [Vega]
ICGC DataPortalENSG00000196290
TCGA cBioPortalNIF3L1
AceView (NCBI)NIF3L1
Genatlas (Paris)NIF3L1
WikiGenes60491
SOURCE (Princeton)NIF3L1
Genetics Home Reference (NIH)NIF3L1
Genomic and cartography
GoldenPath hg19 (UCSC)NIF3L1  -     chr2:201754050-201768655 +  2q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NIF3L1  -     2q33.1   [Description]    (hg38-Dec_2013)
EnsemblNIF3L1 - 2q33.1 [CytoView hg19]  NIF3L1 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBINIF3L1 [Mapview hg19]  NIF3L1 [Mapview hg38]
OMIM605778   
Gene and transcription
Genbank (Entrez)AB038949 AF060513 AF182416 AF283538 AK023378
RefSeq transcript (Entrez)NM_001136039 NM_001142355 NM_001142356 NM_021824
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)NIF3L1
Cluster EST : UnigeneHs.145284 [ NCBI ]
CGAP (NCI)Hs.145284
Alternative Splicing GalleryENSG00000196290
Gene ExpressionNIF3L1 [ NCBI-GEO ]   NIF3L1 [ EBI - ARRAY_EXPRESS ]   NIF3L1 [ SEEK ]   NIF3L1 [ MEM ]
Gene Expression Viewer (FireBrowse)NIF3L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60491
GTEX Portal (Tissue expression)NIF3L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZT8
Splice isoforms : SwissVarQ9GZT8
PhosPhoSitePlusQ9GZT8
Domains : Interpro (EBI)GTP_cyclohydrolase_I/Nif3    GTP_cyclohydrolase_I/NIF3_euk   
Domain families : Pfam (Sanger)NIF3 (PF01784)   
Domain families : Pfam (NCBI)pfam01784   
Conserved Domain (NCBI)NIF3L1
DMDM Disease mutations60491
Blocks (Seattle)NIF3L1
SuperfamilyQ9GZT8
Human Protein AtlasENSG00000196290
Peptide AtlasQ9GZT8
HPRD10424
IPIIPI00604624   IPI00873590   IPI00451429   IPI00451430   IPI00917949   IPI00916550   IPI00916417   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZT8
IntAct (EBI)Q9GZT8
FunCoupENSG00000196290
BioGRIDNIF3L1
STRING (EMBL)NIF3L1
ZODIACNIF3L1
Ontologies - Pathways
QuickGOQ9GZT8
Ontology : AmiGOprotein binding  nucleus  cytoplasm  mitochondrion  transcription factor binding  neuron differentiation  identical protein binding  positive regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  mitochondrion  transcription factor binding  neuron differentiation  identical protein binding  positive regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
NDEx NetworkNIF3L1
Atlas of Cancer Signalling NetworkNIF3L1
Wikipedia pathwaysNIF3L1
Orthology - Evolution
OrthoDB60491
GeneTree (enSembl)ENSG00000196290
Phylogenetic Trees/Animal Genes : TreeFamNIF3L1
HOVERGENQ9GZT8
HOGENOMQ9GZT8
Homologs : HomoloGeneNIF3L1
Homology/Alignments : Family Browser (UCSC)NIF3L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIF3L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIF3L1
dbVarNIF3L1
ClinVarNIF3L1
1000_GenomesNIF3L1 
Exome Variant ServerNIF3L1
ExAC (Exome Aggregation Consortium)NIF3L1 (select the gene name)
Genetic variants : HAPMAP60491
Genomic Variants (DGV)NIF3L1 [DGVbeta]
DECIPHER (Syndromes)2:201754050-201768655  ENSG00000196290
CONAN: Copy Number AnalysisNIF3L1 
Mutations
ICGC Data PortalNIF3L1 
TCGA Data PortalNIF3L1 
Broad Tumor PortalNIF3L1
OASIS PortalNIF3L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNIF3L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNIF3L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NIF3L1
DgiDB (Drug Gene Interaction Database)NIF3L1
DoCM (Curated mutations)NIF3L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIF3L1 (select a term)
intoGenNIF3L1
Cancer3DNIF3L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605778   
Orphanet
MedgenNIF3L1
Genetic Testing Registry NIF3L1
NextProtQ9GZT8 [Medical]
TSGene60491
GENETestsNIF3L1
Huge Navigator NIF3L1 [HugePedia]
snp3D : Map Gene to Disease60491
BioCentury BCIQNIF3L1
ClinGenNIF3L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60491
Chemical/Pharm GKB GenePA31629
Clinical trialNIF3L1
Miscellaneous
canSAR (ICR)NIF3L1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIF3L1
EVEXNIF3L1
GoPubMedNIF3L1
iHOPNIF3L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:55 CET 2017

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