Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NIFK-AS1 (NIFK antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) NIFK-AS1
LocusID (NCBI) 254128
Atlas_Id 70833
Location 2q14.3  [Link to chromosome band 2q14]
Location_base_pair Starts at 121649989 and ends at 121651538 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NIFK-AS1   27385
Cards
Entrez_Gene (NCBI)NIFK-AS1  254128  NIFK antisense RNA 1
Aliases
GeneCards (Weizmann)NIFK-AS1
Ensembl hg19 (Hinxton)ENSG00000236859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236859 [Gene_View]  chr2:121649989-121651538 [Contig_View]  NIFK-AS1 [Vega]
ICGC DataPortalENSG00000236859
TCGA cBioPortalNIFK-AS1
AceView (NCBI)NIFK-AS1
Genatlas (Paris)NIFK-AS1
WikiGenes254128
SOURCE (Princeton)NIFK-AS1
Genetics Home Reference (NIH)NIFK-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)NIFK-AS1  -     chr2:121649989-121651538 +  2q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NIFK-AS1  -     2q14.3   [Description]    (hg19-Feb_2009)
EnsemblNIFK-AS1 - 2q14.3 [CytoView hg19]  NIFK-AS1 - 2q14.3 [CytoView hg38]
Mapping of homologs : NCBINIFK-AS1 [Mapview hg19]  NIFK-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098264 BC036624 BC047384
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIFK-AS1
Cluster EST : UnigeneHs.712685 [ NCBI ]
CGAP (NCI)Hs.712685
Alternative Splicing GalleryENSG00000236859
Gene ExpressionNIFK-AS1 [ NCBI-GEO ]   NIFK-AS1 [ EBI - ARRAY_EXPRESS ]   NIFK-AS1 [ SEEK ]   NIFK-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)NIFK-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)254128
GTEX Portal (Tissue expression)NIFK-AS1
Human Protein AtlasENSG00000236859-NIFK-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NIFK-AS1
DMDM Disease mutations254128
Blocks (Seattle)NIFK-AS1
Human Protein Atlas [tissue]ENSG00000236859-NIFK-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000236859
BioGRIDNIFK-AS1
STRING (EMBL)NIFK-AS1
ZODIACNIFK-AS1
Ontologies - Pathways
Huge Navigator NIFK-AS1 [HugePedia]
snp3D : Map Gene to Disease254128
BioCentury BCIQNIFK-AS1
ClinGenNIFK-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254128
Clinical trialNIFK-AS1
Miscellaneous
canSAR (ICR)NIFK-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIFK-AS1
EVEXNIFK-AS1
GoPubMedNIFK-AS1
iHOPNIFK-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:53 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.